Protein–RNA interactions for Protein: O43175

PHGDH, D-3-phosphoglycerate dehydrogenase, humanhuman

Known RBP Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDHO43175 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PHGDHO43175 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PHGDHO43175 AC105265.2-201ENST00000467189 838 ntBASIC20.55■□□□□ 0.88
PHGDHO43175 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.55■□□□□ 0.88
PHGDHO43175 AC005837.3-201ENST00000612163 286 ntBASIC20.55■□□□□ 0.88
PHGDHO43175 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
PHGDHO43175 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PHGDHO43175 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PHGDHO43175 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
PHGDHO43175 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PHGDHO43175 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PHGDHO43175 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PHGDHO43175 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PHGDHO43175 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
PHGDHO43175 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.54■□□□□ 0.88
PHGDHO43175 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PHGDHO43175 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.54■□□□□ 0.88
PHGDHO43175 FP700111.2-201ENST00000619190 1892 ntBASIC20.54■□□□□ 0.88
PHGDHO43175 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PHGDHO43175 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PHGDHO43175 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.54■□□□□ 0.88
PHGDHO43175 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.54■□□□□ 0.88
PHGDHO43175 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PHGDHO43175 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PHGDHO43175 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.54■□□□□ 0.88
PHGDHO43175 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.54■□□□□ 0.88
PHGDHO43175 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.54■□□□□ 0.88
PHGDHO43175 KRT87P-202ENST00000534226 1464 ntBASIC20.54■□□□□ 0.88
PHGDHO43175 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
PHGDHO43175 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
PHGDHO43175 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
PHGDHO43175 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.54■□□□□ 0.88
PHGDHO43175 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PHGDHO43175 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PHGDHO43175 AL121603.2-201ENST00000557373 2117 ntBASIC20.53■□□□□ 0.88
PHGDHO43175 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PHGDHO43175 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PHGDHO43175 PCDHAC2-203ENST00000615316 3011 ntBASIC20.53■□□□□ 0.88
PHGDHO43175 IRS3P-201ENST00000223076 1006 ntBASIC20.53■□□□□ 0.88
PHGDHO43175 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
PHGDHO43175 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
PHGDHO43175 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.53■□□□□ 0.88
PHGDHO43175 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
PHGDHO43175 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PHGDHO43175 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.53■□□□□ 0.88
PHGDHO43175 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
PHGDHO43175 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC20.53■□□□□ 0.88
PHGDHO43175 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
PHGDHO43175 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.52■□□□□ 0.88
PHGDHO43175 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
PHGDHO43175 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.52■□□□□ 0.88
PHGDHO43175 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PHGDHO43175 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PHGDHO43175 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PHGDHO43175 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.52■□□□□ 0.88
PHGDHO43175 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
PHGDHO43175 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
PHGDHO43175 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PHGDHO43175 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
PHGDHO43175 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.87
PHGDHO43175 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
PHGDHO43175 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
PHGDHO43175 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
PHGDHO43175 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PHGDHO43175 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.51■□□□□ 0.87
PHGDHO43175 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
PHGDHO43175 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PHGDHO43175 SERP1-208ENST00000491660 830 ntTSL 2 BASIC20.51■□□□□ 0.87
PHGDHO43175 AC008175.2-201ENST00000612840 297 ntBASIC20.51■□□□□ 0.87
PHGDHO43175 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PHGDHO43175 AC011484.1-201ENST00000377652 1995 ntBASIC20.51■□□□□ 0.87
PHGDHO43175 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PHGDHO43175 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PHGDHO43175 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
PHGDHO43175 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.51■□□□□ 0.87
PHGDHO43175 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
PHGDHO43175 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PHGDHO43175 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PHGDHO43175 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
PHGDHO43175 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.5■□□□□ 0.87
PHGDHO43175 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
PHGDHO43175 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
PHGDHO43175 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
PHGDHO43175 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.5■□□□□ 0.87
PHGDHO43175 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.5■□□□□ 0.87
PHGDHO43175 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PHGDHO43175 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC20.5■□□□□ 0.87
PHGDHO43175 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.5■□□□□ 0.87
PHGDHO43175 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PHGDHO43175 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.5■□□□□ 0.87
PHGDHO43175 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.5■□□□□ 0.87
PHGDHO43175 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PHGDHO43175 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PHGDHO43175 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.5■□□□□ 0.87
PHGDHO43175 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
PHGDHO43175 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
PHGDHO43175 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PHGDHO43175 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PHGDHO43175 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PHGDHO43175 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms