Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
PCDHA1Q9Y5I3 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC23.83■■□□□ 1.4
PCDHA1Q9Y5I3 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
PCDHA1Q9Y5I3 AC079834.2-201ENST00000609776 1949 ntBASIC23.82■■□□□ 1.4
PCDHA1Q9Y5I3 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
PCDHA1Q9Y5I3 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
PCDHA1Q9Y5I3 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PCDHA1Q9Y5I3 SAPCD2P1-201ENST00000395413 1184 ntBASIC23.82■■□□□ 1.4
PCDHA1Q9Y5I3 BX276092.2-201ENST00000417668 665 ntBASIC23.82■■□□□ 1.4
PCDHA1Q9Y5I3 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC23.82■■□□□ 1.4
PCDHA1Q9Y5I3 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC23.82■■□□□ 1.4
PCDHA1Q9Y5I3 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
PCDHA1Q9Y5I3 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
PCDHA1Q9Y5I3 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PCDHA1Q9Y5I3 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PCDHA1Q9Y5I3 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
PCDHA1Q9Y5I3 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
PCDHA1Q9Y5I3 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
PCDHA1Q9Y5I3 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
PCDHA1Q9Y5I3 PARN-205ENST00000539279 1557 ntTSL 2 BASIC23.82■■□□□ 1.4
PCDHA1Q9Y5I3 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PCDHA1Q9Y5I3 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PCDHA1Q9Y5I3 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
PCDHA1Q9Y5I3 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
PCDHA1Q9Y5I3 AC116050.2-201ENST00000612102 1779 ntBASIC23.81■■□□□ 1.4
PCDHA1Q9Y5I3 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PCDHA1Q9Y5I3 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
PCDHA1Q9Y5I3 VMO1-204ENST00000441199 741 ntTSL 2 BASIC23.81■■□□□ 1.4
PCDHA1Q9Y5I3 APTR-205ENST00000447009 902 ntTSL 2 BASIC23.81■■□□□ 1.4
PCDHA1Q9Y5I3 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC23.81■■□□□ 1.4
PCDHA1Q9Y5I3 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC23.81■■□□□ 1.4
PCDHA1Q9Y5I3 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC23.81■■□□□ 1.4
PCDHA1Q9Y5I3 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
PCDHA1Q9Y5I3 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
PCDHA1Q9Y5I3 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
PCDHA1Q9Y5I3 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PCDHA1Q9Y5I3 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PCDHA1Q9Y5I3 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC23.8■■□□□ 1.4
PCDHA1Q9Y5I3 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PCDHA1Q9Y5I3 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC23.8■■□□□ 1.4
PCDHA1Q9Y5I3 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
PCDHA1Q9Y5I3 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
PCDHA1Q9Y5I3 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
PCDHA1Q9Y5I3 AC069152.1-201ENST00000438030 544 ntBASIC23.8■■□□□ 1.4
PCDHA1Q9Y5I3 AC098934.4-201ENST00000564127 592 ntBASIC23.8■■□□□ 1.4
PCDHA1Q9Y5I3 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC23.8■■□□□ 1.4
PCDHA1Q9Y5I3 MIR4758-201ENST00000577688 71 ntBASIC23.8■■□□□ 1.4
PCDHA1Q9Y5I3 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PCDHA1Q9Y5I3 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
PCDHA1Q9Y5I3 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
PCDHA1Q9Y5I3 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
PCDHA1Q9Y5I3 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC23.79■■□□□ 1.4
PCDHA1Q9Y5I3 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PCDHA1Q9Y5I3 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PCDHA1Q9Y5I3 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC23.79■■□□□ 1.4
PCDHA1Q9Y5I3 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
PCDHA1Q9Y5I3 AC073210.2-201ENST00000430369 194 ntBASIC23.79■■□□□ 1.4
PCDHA1Q9Y5I3 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC23.79■■□□□ 1.4
PCDHA1Q9Y5I3 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC23.79■■□□□ 1.4
PCDHA1Q9Y5I3 ISCU-212ENST00000547005 795 ntTSL 3 BASIC23.79■■□□□ 1.4
PCDHA1Q9Y5I3 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC23.79■■□□□ 1.4
PCDHA1Q9Y5I3 AC133041.1-202ENST00000642053 222 ntBASIC23.79■■□□□ 1.4
PCDHA1Q9Y5I3 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
PCDHA1Q9Y5I3 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC23.79■■□□□ 1.4
PCDHA1Q9Y5I3 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
PCDHA1Q9Y5I3 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PCDHA1Q9Y5I3 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
PCDHA1Q9Y5I3 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
PCDHA1Q9Y5I3 EXOC3-AS1-202ENST00000623673 1663 ntBASIC23.79■■□□□ 1.4
PCDHA1Q9Y5I3 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PCDHA1Q9Y5I3 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
PCDHA1Q9Y5I3 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
PCDHA1Q9Y5I3 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC23.78■■□□□ 1.4
PCDHA1Q9Y5I3 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCDHA1Q9Y5I3 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCDHA1Q9Y5I3 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCDHA1Q9Y5I3 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC23.78■■□□□ 1.4
PCDHA1Q9Y5I3 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCDHA1Q9Y5I3 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC23.78■■□□□ 1.4
PCDHA1Q9Y5I3 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC23.78■■□□□ 1.4
PCDHA1Q9Y5I3 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC23.78■■□□□ 1.4
PCDHA1Q9Y5I3 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC23.78■■□□□ 1.4
PCDHA1Q9Y5I3 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
PCDHA1Q9Y5I3 RGMA-211ENST00000557420 989 ntTSL 3 BASIC23.78■■□□□ 1.4
PCDHA1Q9Y5I3 KLF13-207ENST00000560473 489 ntTSL 3 BASIC23.78■■□□□ 1.4
PCDHA1Q9Y5I3 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC23.78■■□□□ 1.4
PCDHA1Q9Y5I3 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCDHA1Q9Y5I3 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCDHA1Q9Y5I3 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PCDHA1Q9Y5I3 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
PCDHA1Q9Y5I3 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
PCDHA1Q9Y5I3 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
PCDHA1Q9Y5I3 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
PCDHA1Q9Y5I3 AL024507.2-201ENST00000606070 2574 ntBASIC23.77■■□□□ 1.4
PCDHA1Q9Y5I3 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC23.77■■□□□ 1.4
PCDHA1Q9Y5I3 AC100791.3-201ENST00000617619 330 ntBASIC23.77■■□□□ 1.4
PCDHA1Q9Y5I3 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
PCDHA1Q9Y5I3 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC23.77■■□□□ 1.4
PCDHA1Q9Y5I3 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC23.77■■□□□ 1.4
PCDHA1Q9Y5I3 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms