Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC25.31■■□□□ 1.64
ZC3H4Q9UPT8 VMO1-204ENST00000441199 741 ntTSL 2 BASIC25.31■■□□□ 1.64
ZC3H4Q9UPT8 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
ZC3H4Q9UPT8 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC25.31■■□□□ 1.64
ZC3H4Q9UPT8 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC25.31■■□□□ 1.64
ZC3H4Q9UPT8 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC25.31■■□□□ 1.64
ZC3H4Q9UPT8 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
ZC3H4Q9UPT8 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC25.31■■□□□ 1.64
ZC3H4Q9UPT8 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC25.3■■□□□ 1.64
ZC3H4Q9UPT8 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
ZC3H4Q9UPT8 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
ZC3H4Q9UPT8 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
ZC3H4Q9UPT8 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC25.3■■□□□ 1.64
ZC3H4Q9UPT8 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
ZC3H4Q9UPT8 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC25.3■■□□□ 1.64
ZC3H4Q9UPT8 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC25.3■■□□□ 1.64
ZC3H4Q9UPT8 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
ZC3H4Q9UPT8 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC25.3■■□□□ 1.64
ZC3H4Q9UPT8 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
ZC3H4Q9UPT8 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
ZC3H4Q9UPT8 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
ZC3H4Q9UPT8 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
ZC3H4Q9UPT8 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
ZC3H4Q9UPT8 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC25.3■■□□□ 1.64
ZC3H4Q9UPT8 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
ZC3H4Q9UPT8 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
ZC3H4Q9UPT8 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
ZC3H4Q9UPT8 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC25.29■■□□□ 1.64
ZC3H4Q9UPT8 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC25.29■■□□□ 1.64
ZC3H4Q9UPT8 MMP23A-201ENST00000234610 1017 ntBASIC25.29■■□□□ 1.64
ZC3H4Q9UPT8 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
ZC3H4Q9UPT8 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
ZC3H4Q9UPT8 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
ZC3H4Q9UPT8 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC25.29■■□□□ 1.64
ZC3H4Q9UPT8 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC25.29■■□□□ 1.64
ZC3H4Q9UPT8 NME3-204ENST00000563498 920 ntTSL 2 BASIC25.29■■□□□ 1.64
ZC3H4Q9UPT8 AC145285.6-201ENST00000604632 637 ntBASIC25.29■■□□□ 1.64
ZC3H4Q9UPT8 CABP2-204ENST00000636477 941 ntTSL 5 BASIC25.29■■□□□ 1.64
ZC3H4Q9UPT8 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
ZC3H4Q9UPT8 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC25.29■■□□□ 1.64
ZC3H4Q9UPT8 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC25.29■■□□□ 1.64
ZC3H4Q9UPT8 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
ZC3H4Q9UPT8 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC25.28■■□□□ 1.64
ZC3H4Q9UPT8 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC25.28■■□□□ 1.64
ZC3H4Q9UPT8 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC25.28■■□□□ 1.64
ZC3H4Q9UPT8 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC25.28■■□□□ 1.64
ZC3H4Q9UPT8 AC026471.5-201ENST00000615068 467 ntBASIC25.28■■□□□ 1.64
ZC3H4Q9UPT8 AC105020.6-201ENST00000621523 1217 ntBASIC25.28■■□□□ 1.64
ZC3H4Q9UPT8 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC25.28■■□□□ 1.64
ZC3H4Q9UPT8 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC25.28■■□□□ 1.64
ZC3H4Q9UPT8 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
ZC3H4Q9UPT8 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC25.28■■□□□ 1.64
ZC3H4Q9UPT8 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
ZC3H4Q9UPT8 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
ZC3H4Q9UPT8 KRASP1-201ENST00000407852 552 ntBASIC25.27■■□□□ 1.64
ZC3H4Q9UPT8 P4HB-223ENST00000576390 439 ntTSL 4 BASIC25.27■■□□□ 1.64
ZC3H4Q9UPT8 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
ZC3H4Q9UPT8 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC25.27■■□□□ 1.64
ZC3H4Q9UPT8 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC25.26■■□□□ 1.64
ZC3H4Q9UPT8 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
ZC3H4Q9UPT8 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
ZC3H4Q9UPT8 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC25.26■■□□□ 1.63
ZC3H4Q9UPT8 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
ZC3H4Q9UPT8 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
ZC3H4Q9UPT8 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.63
ZC3H4Q9UPT8 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
ZC3H4Q9UPT8 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
ZC3H4Q9UPT8 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
ZC3H4Q9UPT8 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
ZC3H4Q9UPT8 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC25.26■■□□□ 1.63
ZC3H4Q9UPT8 CRAT-202ENST00000393384 973 ntTSL 2 BASIC25.26■■□□□ 1.63
ZC3H4Q9UPT8 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC25.26■■□□□ 1.63
ZC3H4Q9UPT8 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC25.26■■□□□ 1.63
ZC3H4Q9UPT8 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
ZC3H4Q9UPT8 AC004812.2-201ENST00000611079 2094 ntBASIC25.26■■□□□ 1.63
ZC3H4Q9UPT8 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
ZC3H4Q9UPT8 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
ZC3H4Q9UPT8 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
ZC3H4Q9UPT8 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC25.25■■□□□ 1.63
ZC3H4Q9UPT8 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
ZC3H4Q9UPT8 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
ZC3H4Q9UPT8 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
ZC3H4Q9UPT8 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
ZC3H4Q9UPT8 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
ZC3H4Q9UPT8 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC25.25■■□□□ 1.63
ZC3H4Q9UPT8 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC25.25■■□□□ 1.63
ZC3H4Q9UPT8 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
ZC3H4Q9UPT8 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
ZC3H4Q9UPT8 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC25.25■■□□□ 1.63
ZC3H4Q9UPT8 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC25.25■■□□□ 1.63
ZC3H4Q9UPT8 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
ZC3H4Q9UPT8 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC25.24■■□□□ 1.63
ZC3H4Q9UPT8 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC25.24■■□□□ 1.63
ZC3H4Q9UPT8 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC25.24■■□□□ 1.63
ZC3H4Q9UPT8 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
ZC3H4Q9UPT8 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
ZC3H4Q9UPT8 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
ZC3H4Q9UPT8 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
ZC3H4Q9UPT8 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
ZC3H4Q9UPT8 GGT1-206ENST00000404223 952 ntTSL 2 BASIC25.24■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms