Protein–RNA interactions for Protein: Q9UMX0

UBQLN1, Ubiquilin-1, humanhuman

Known RBP Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN1Q9UMX0 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC22.3■■□□□ 1.16
UBQLN1Q9UMX0 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC22.3■■□□□ 1.16
UBQLN1Q9UMX0 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
UBQLN1Q9UMX0 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
UBQLN1Q9UMX0 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
UBQLN1Q9UMX0 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC22.3■■□□□ 1.16
UBQLN1Q9UMX0 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
UBQLN1Q9UMX0 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
UBQLN1Q9UMX0 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC22.3■■□□□ 1.16
UBQLN1Q9UMX0 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC22.3■■□□□ 1.16
UBQLN1Q9UMX0 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
UBQLN1Q9UMX0 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
UBQLN1Q9UMX0 AC079834.2-201ENST00000609776 1949 ntBASIC22.29■■□□□ 1.16
UBQLN1Q9UMX0 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC22.29■■□□□ 1.16
UBQLN1Q9UMX0 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
UBQLN1Q9UMX0 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC22.29■■□□□ 1.16
UBQLN1Q9UMX0 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
UBQLN1Q9UMX0 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
UBQLN1Q9UMX0 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC22.29■■□□□ 1.16
UBQLN1Q9UMX0 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
UBQLN1Q9UMX0 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC22.29■■□□□ 1.16
UBQLN1Q9UMX0 APTR-205ENST00000447009 902 ntTSL 2 BASIC22.29■■□□□ 1.16
UBQLN1Q9UMX0 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
UBQLN1Q9UMX0 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC22.29■■□□□ 1.16
UBQLN1Q9UMX0 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC22.29■■□□□ 1.16
UBQLN1Q9UMX0 RGMA-211ENST00000557420 989 ntTSL 3 BASIC22.29■■□□□ 1.16
UBQLN1Q9UMX0 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC22.29■■□□□ 1.16
UBQLN1Q9UMX0 AC092118.2-201ENST00000613495 667 ntBASIC22.29■■□□□ 1.16
UBQLN1Q9UMX0 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
UBQLN1Q9UMX0 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
UBQLN1Q9UMX0 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
UBQLN1Q9UMX0 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
UBQLN1Q9UMX0 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC22.29■■□□□ 1.16
UBQLN1Q9UMX0 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC22.28■■□□□ 1.16
UBQLN1Q9UMX0 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
UBQLN1Q9UMX0 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
UBQLN1Q9UMX0 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
UBQLN1Q9UMX0 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
UBQLN1Q9UMX0 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
UBQLN1Q9UMX0 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC22.28■■□□□ 1.16
UBQLN1Q9UMX0 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
UBQLN1Q9UMX0 EXOC3-AS1-202ENST00000623673 1663 ntBASIC22.28■■□□□ 1.16
UBQLN1Q9UMX0 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
UBQLN1Q9UMX0 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
UBQLN1Q9UMX0 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC22.28■■□□□ 1.16
UBQLN1Q9UMX0 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC22.28■■□□□ 1.16
UBQLN1Q9UMX0 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
UBQLN1Q9UMX0 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC22.28■■□□□ 1.16
UBQLN1Q9UMX0 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
UBQLN1Q9UMX0 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
UBQLN1Q9UMX0 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
UBQLN1Q9UMX0 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC22.27■■□□□ 1.16
UBQLN1Q9UMX0 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC22.27■■□□□ 1.16
UBQLN1Q9UMX0 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC22.27■■□□□ 1.16
UBQLN1Q9UMX0 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
UBQLN1Q9UMX0 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC22.27■■□□□ 1.16
UBQLN1Q9UMX0 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
UBQLN1Q9UMX0 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
UBQLN1Q9UMX0 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
UBQLN1Q9UMX0 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
UBQLN1Q9UMX0 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
UBQLN1Q9UMX0 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC22.27■■□□□ 1.16
UBQLN1Q9UMX0 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
UBQLN1Q9UMX0 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
UBQLN1Q9UMX0 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
UBQLN1Q9UMX0 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
UBQLN1Q9UMX0 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
UBQLN1Q9UMX0 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC22.26■■□□□ 1.15
UBQLN1Q9UMX0 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC22.26■■□□□ 1.15
UBQLN1Q9UMX0 PPP1R14BP2-201ENST00000426284 444 ntBASIC22.26■■□□□ 1.15
UBQLN1Q9UMX0 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
UBQLN1Q9UMX0 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC22.26■■□□□ 1.15
UBQLN1Q9UMX0 AC098934.4-201ENST00000564127 592 ntBASIC22.26■■□□□ 1.15
UBQLN1Q9UMX0 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC22.26■■□□□ 1.15
UBQLN1Q9UMX0 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
UBQLN1Q9UMX0 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
UBQLN1Q9UMX0 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
UBQLN1Q9UMX0 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
UBQLN1Q9UMX0 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
UBQLN1Q9UMX0 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
UBQLN1Q9UMX0 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
UBQLN1Q9UMX0 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC22.26■■□□□ 1.15
UBQLN1Q9UMX0 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC22.26■■□□□ 1.15
UBQLN1Q9UMX0 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC22.26■■□□□ 1.15
UBQLN1Q9UMX0 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC22.25■■□□□ 1.15
UBQLN1Q9UMX0 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
UBQLN1Q9UMX0 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
UBQLN1Q9UMX0 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
UBQLN1Q9UMX0 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
UBQLN1Q9UMX0 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC22.25■■□□□ 1.15
UBQLN1Q9UMX0 MCRIP2P1-201ENST00000394346 511 ntBASIC22.25■■□□□ 1.15
UBQLN1Q9UMX0 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
UBQLN1Q9UMX0 CYP2T3P-201ENST00000601990 817 ntBASIC22.25■■□□□ 1.15
UBQLN1Q9UMX0 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
UBQLN1Q9UMX0 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC22.25■■□□□ 1.15
UBQLN1Q9UMX0 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
UBQLN1Q9UMX0 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
UBQLN1Q9UMX0 LINC00565-201ENST00000562710 2331 ntBASIC22.25■■□□□ 1.15
UBQLN1Q9UMX0 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
UBQLN1Q9UMX0 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms