Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MMP28Q9H239 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
MMP28Q9H239 ASB1-202ENST00000409297 878 ntTSL 5 BASIC18.21■□□□□ 0.51
MMP28Q9H239 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC18.21■□□□□ 0.51
MMP28Q9H239 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
MMP28Q9H239 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC18.21■□□□□ 0.51
MMP28Q9H239 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
MMP28Q9H239 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MMP28Q9H239 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
MMP28Q9H239 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
MMP28Q9H239 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MMP28Q9H239 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.2■□□□□ 0.5
MMP28Q9H239 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
MMP28Q9H239 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC18.2■□□□□ 0.5
MMP28Q9H239 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
MMP28Q9H239 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC18.2■□□□□ 0.5
MMP28Q9H239 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MMP28Q9H239 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MMP28Q9H239 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
MMP28Q9H239 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
MMP28Q9H239 MIR638-201ENST00000385237 100 ntBASIC18.2■□□□□ 0.5
MMP28Q9H239 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC18.2■□□□□ 0.5
MMP28Q9H239 AL136116.3-201ENST00000402907 1138 ntBASIC18.2■□□□□ 0.5
MMP28Q9H239 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MMP28Q9H239 NALT1-201ENST00000429224 738 ntTSL 5 BASIC18.2■□□□□ 0.5
MMP28Q9H239 AC104564.3-201ENST00000582367 638 ntBASIC18.2■□□□□ 0.5
MMP28Q9H239 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC18.2■□□□□ 0.5
MMP28Q9H239 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
MMP28Q9H239 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MMP28Q9H239 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC18.2■□□□□ 0.5
MMP28Q9H239 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MMP28Q9H239 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
MMP28Q9H239 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
MMP28Q9H239 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MMP28Q9H239 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
MMP28Q9H239 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MMP28Q9H239 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
MMP28Q9H239 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MMP28Q9H239 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
MMP28Q9H239 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
MMP28Q9H239 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
MMP28Q9H239 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
MMP28Q9H239 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC18.19■□□□□ 0.5
MMP28Q9H239 RALB-208ENST00000631312 311 ntTSL 5 BASIC18.19■□□□□ 0.5
MMP28Q9H239 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
MMP28Q9H239 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
MMP28Q9H239 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
MMP28Q9H239 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
MMP28Q9H239 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
MMP28Q9H239 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.18■□□□□ 0.5
MMP28Q9H239 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC18.18■□□□□ 0.5
MMP28Q9H239 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.18■□□□□ 0.5
MMP28Q9H239 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MMP28Q9H239 AC116562.4-201ENST00000641316 2276 ntBASIC18.18■□□□□ 0.5
MMP28Q9H239 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
MMP28Q9H239 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
MMP28Q9H239 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC18.18■□□□□ 0.5
MMP28Q9H239 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
MMP28Q9H239 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC18.18■□□□□ 0.5
MMP28Q9H239 AL512631.2-201ENST00000604634 923 ntBASIC18.18■□□□□ 0.5
MMP28Q9H239 AL139246.5-201ENST00000606645 996 ntBASIC18.18■□□□□ 0.5
MMP28Q9H239 RASSF1-AS1-201ENST00000629828 790 ntBASIC18.18■□□□□ 0.5
MMP28Q9H239 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC18.18■□□□□ 0.5
MMP28Q9H239 VGF-203ENST00000611537 1622 ntTSL 5 BASIC18.18■□□□□ 0.5
MMP28Q9H239 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MMP28Q9H239 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
MMP28Q9H239 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MMP28Q9H239 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
MMP28Q9H239 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
MMP28Q9H239 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MMP28Q9H239 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MMP28Q9H239 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
MMP28Q9H239 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.18■□□□□ 0.5
MMP28Q9H239 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MMP28Q9H239 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
MMP28Q9H239 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
MMP28Q9H239 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
MMP28Q9H239 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
MMP28Q9H239 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
MMP28Q9H239 LETM1P2-201ENST00000597330 2178 ntBASIC18.17■□□□□ 0.5
MMP28Q9H239 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MMP28Q9H239 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
MMP28Q9H239 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
MMP28Q9H239 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC18.17■□□□□ 0.5
MMP28Q9H239 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MMP28Q9H239 SRD5A1P1-201ENST00000442297 786 ntBASIC18.17■□□□□ 0.5
MMP28Q9H239 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC18.17■□□□□ 0.5
MMP28Q9H239 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
MMP28Q9H239 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC18.17■□□□□ 0.5
MMP28Q9H239 DUX4L4-201ENST00000566884 1269 ntBASIC18.17■□□□□ 0.5
MMP28Q9H239 AC241377.3-202ENST00000626088 1088 ntBASIC18.17■□□□□ 0.5
MMP28Q9H239 AC241585.3-202ENST00000628937 1088 ntBASIC18.17■□□□□ 0.5
MMP28Q9H239 AC245100.8-202ENST00000629247 1058 ntBASIC18.17■□□□□ 0.5
MMP28Q9H239 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
MMP28Q9H239 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
MMP28Q9H239 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
MMP28Q9H239 GATM-206ENST00000558336 1522 ntTSL 2 BASIC18.17■□□□□ 0.5
MMP28Q9H239 AC004408.2-201ENST00000623613 2777 ntBASIC18.17■□□□□ 0.5
MMP28Q9H239 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
MMP28Q9H239 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms