Protein–RNA interactions for Protein: Q9C0I3

CCSER1, Serine-rich coiled-coil domain-containing protein 1, humanhuman

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCSER1Q9C0I3 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCSER1Q9C0I3 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCSER1Q9C0I3 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCSER1Q9C0I3 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CCSER1Q9C0I3 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC23.24■■□□□ 1.31
CCSER1Q9C0I3 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CCSER1Q9C0I3 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC23.24■■□□□ 1.31
CCSER1Q9C0I3 AC091799.1-201ENST00000422823 811 ntBASIC23.24■■□□□ 1.31
CCSER1Q9C0I3 MYCNOS-205ENST00000641950 531 ntBASIC23.24■■□□□ 1.31
CCSER1Q9C0I3 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC23.24■■□□□ 1.31
CCSER1Q9C0I3 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCSER1Q9C0I3 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCSER1Q9C0I3 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCSER1Q9C0I3 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCSER1Q9C0I3 STX7-201ENST00000367937 1090 ntTSL 5 BASIC23.23■■□□□ 1.31
CCSER1Q9C0I3 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC23.23■■□□□ 1.31
CCSER1Q9C0I3 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CCSER1Q9C0I3 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC23.23■■□□□ 1.31
CCSER1Q9C0I3 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC23.23■■□□□ 1.31
CCSER1Q9C0I3 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC23.23■■□□□ 1.31
CCSER1Q9C0I3 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCSER1Q9C0I3 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CCSER1Q9C0I3 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CCSER1Q9C0I3 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCSER1Q9C0I3 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CCSER1Q9C0I3 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCSER1Q9C0I3 ME2-216ENST00000639850 2331 ntTSL 5 BASIC23.22■■□□□ 1.31
CCSER1Q9C0I3 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
CCSER1Q9C0I3 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CCSER1Q9C0I3 PTPA-214ENST00000423100 988 ntTSL 2 BASIC23.22■■□□□ 1.31
CCSER1Q9C0I3 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCSER1Q9C0I3 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
CCSER1Q9C0I3 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCSER1Q9C0I3 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CCSER1Q9C0I3 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCSER1Q9C0I3 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
CCSER1Q9C0I3 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCSER1Q9C0I3 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCSER1Q9C0I3 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCSER1Q9C0I3 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCSER1Q9C0I3 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC23.21■■□□□ 1.31
CCSER1Q9C0I3 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CCSER1Q9C0I3 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCSER1Q9C0I3 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC23.21■■□□□ 1.31
CCSER1Q9C0I3 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC23.21■■□□□ 1.31
CCSER1Q9C0I3 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCSER1Q9C0I3 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCSER1Q9C0I3 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCSER1Q9C0I3 PARP1-202ENST00000366792 553 ntTSL 3 BASIC23.21■■□□□ 1.31
CCSER1Q9C0I3 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
CCSER1Q9C0I3 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
CCSER1Q9C0I3 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC23.21■■□□□ 1.31
CCSER1Q9C0I3 DBI-210ENST00000542275 757 ntTSL 5 BASIC23.21■■□□□ 1.31
CCSER1Q9C0I3 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC23.21■■□□□ 1.31
CCSER1Q9C0I3 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC23.21■■□□□ 1.31
CCSER1Q9C0I3 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC23.21■■□□□ 1.31
CCSER1Q9C0I3 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CCSER1Q9C0I3 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCSER1Q9C0I3 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CCSER1Q9C0I3 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCSER1Q9C0I3 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC23.21■■□□□ 1.31
CCSER1Q9C0I3 AC116050.2-201ENST00000612102 1779 ntBASIC23.21■■□□□ 1.31
CCSER1Q9C0I3 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC23.21■■□□□ 1.31
CCSER1Q9C0I3 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CCSER1Q9C0I3 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CCSER1Q9C0I3 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
CCSER1Q9C0I3 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
CCSER1Q9C0I3 AC007225.1-201ENST00000566331 1836 ntBASIC23.2■■□□□ 1.3
CCSER1Q9C0I3 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
CCSER1Q9C0I3 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
CCSER1Q9C0I3 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CCSER1Q9C0I3 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC23.2■■□□□ 1.3
CCSER1Q9C0I3 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
CCSER1Q9C0I3 CD44-222ENST00000526025 1052 ntTSL 2 BASIC23.2■■□□□ 1.3
CCSER1Q9C0I3 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC23.2■■□□□ 1.3
CCSER1Q9C0I3 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
CCSER1Q9C0I3 FEM1AP1-201ENST00000431297 1995 ntBASIC23.2■■□□□ 1.3
CCSER1Q9C0I3 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
CCSER1Q9C0I3 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC23.19■■□□□ 1.3
CCSER1Q9C0I3 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC23.19■■□□□ 1.3
CCSER1Q9C0I3 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CCSER1Q9C0I3 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
CCSER1Q9C0I3 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CCSER1Q9C0I3 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC23.19■■□□□ 1.3
CCSER1Q9C0I3 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC23.19■■□□□ 1.3
CCSER1Q9C0I3 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC23.19■■□□□ 1.3
CCSER1Q9C0I3 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC23.19■■□□□ 1.3
CCSER1Q9C0I3 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC23.19■■□□□ 1.3
CCSER1Q9C0I3 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC23.19■■□□□ 1.3
CCSER1Q9C0I3 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CCSER1Q9C0I3 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCSER1Q9C0I3 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC23.19■■□□□ 1.3
CCSER1Q9C0I3 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCSER1Q9C0I3 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC23.19■■□□□ 1.3
CCSER1Q9C0I3 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC23.19■■□□□ 1.3
CCSER1Q9C0I3 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCSER1Q9C0I3 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CCSER1Q9C0I3 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCSER1Q9C0I3 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCSER1Q9C0I3 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms