Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CLHC1Q8NHS4 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLHC1Q8NHS4 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLHC1Q8NHS4 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
CLHC1Q8NHS4 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.87■□□□□ 0.77
CLHC1Q8NHS4 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLHC1Q8NHS4 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
CLHC1Q8NHS4 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLHC1Q8NHS4 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.87■□□□□ 0.77
CLHC1Q8NHS4 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
CLHC1Q8NHS4 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLHC1Q8NHS4 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CLHC1Q8NHS4 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CLHC1Q8NHS4 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLHC1Q8NHS4 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CLHC1Q8NHS4 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLHC1Q8NHS4 HYI-206ENST00000372434 1025 ntTSL 5 BASIC19.86■□□□□ 0.77
CLHC1Q8NHS4 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLHC1Q8NHS4 MTURN-203ENST00000409688 843 ntTSL 2 BASIC19.86■□□□□ 0.77
CLHC1Q8NHS4 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CLHC1Q8NHS4 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC19.86■□□□□ 0.77
CLHC1Q8NHS4 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLHC1Q8NHS4 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC19.86■□□□□ 0.77
CLHC1Q8NHS4 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CLHC1Q8NHS4 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
CLHC1Q8NHS4 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CLHC1Q8NHS4 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.86■□□□□ 0.77
CLHC1Q8NHS4 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC19.86■□□□□ 0.77
CLHC1Q8NHS4 AL391422.3-201ENST00000603791 2761 ntBASIC19.85■□□□□ 0.77
CLHC1Q8NHS4 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLHC1Q8NHS4 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CLHC1Q8NHS4 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLHC1Q8NHS4 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLHC1Q8NHS4 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
CLHC1Q8NHS4 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
CLHC1Q8NHS4 NME4-202ENST00000382940 766 ntTSL 3 BASIC19.85■□□□□ 0.77
CLHC1Q8NHS4 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC19.85■□□□□ 0.77
CLHC1Q8NHS4 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC19.85■□□□□ 0.77
CLHC1Q8NHS4 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CLHC1Q8NHS4 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CLHC1Q8NHS4 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC19.85■□□□□ 0.77
CLHC1Q8NHS4 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CLHC1Q8NHS4 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLHC1Q8NHS4 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CLHC1Q8NHS4 NME4-211ENST00000620944 1193 ntTSL 2 BASIC19.85■□□□□ 0.77
CLHC1Q8NHS4 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
CLHC1Q8NHS4 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
CLHC1Q8NHS4 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLHC1Q8NHS4 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLHC1Q8NHS4 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CLHC1Q8NHS4 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.85■□□□□ 0.77
CLHC1Q8NHS4 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLHC1Q8NHS4 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLHC1Q8NHS4 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.85■□□□□ 0.77
CLHC1Q8NHS4 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLHC1Q8NHS4 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
CLHC1Q8NHS4 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CLHC1Q8NHS4 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLHC1Q8NHS4 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLHC1Q8NHS4 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLHC1Q8NHS4 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.84■□□□□ 0.77
CLHC1Q8NHS4 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC19.84■□□□□ 0.77
CLHC1Q8NHS4 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC19.84■□□□□ 0.77
CLHC1Q8NHS4 AC053503.5-201ENST00000601508 636 ntBASIC19.84■□□□□ 0.77
CLHC1Q8NHS4 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CLHC1Q8NHS4 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLHC1Q8NHS4 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
CLHC1Q8NHS4 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.84■□□□□ 0.77
CLHC1Q8NHS4 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
CLHC1Q8NHS4 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLHC1Q8NHS4 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLHC1Q8NHS4 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLHC1Q8NHS4 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
CLHC1Q8NHS4 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
CLHC1Q8NHS4 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLHC1Q8NHS4 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.84■□□□□ 0.77
CLHC1Q8NHS4 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.83■□□□□ 0.77
CLHC1Q8NHS4 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
CLHC1Q8NHS4 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CLHC1Q8NHS4 AP005212.1-201ENST00000581547 1997 ntBASIC19.83■□□□□ 0.77
CLHC1Q8NHS4 PCDHAC2-203ENST00000615316 3011 ntBASIC19.83■□□□□ 0.77
CLHC1Q8NHS4 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC19.83■□□□□ 0.77
CLHC1Q8NHS4 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
CLHC1Q8NHS4 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
CLHC1Q8NHS4 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
CLHC1Q8NHS4 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLHC1Q8NHS4 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLHC1Q8NHS4 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLHC1Q8NHS4 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CLHC1Q8NHS4 AC105265.2-201ENST00000467189 838 ntBASIC19.82■□□□□ 0.76
CLHC1Q8NHS4 AL358852.1-201ENST00000623174 1268 ntBASIC19.82■□□□□ 0.76
CLHC1Q8NHS4 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLHC1Q8NHS4 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
CLHC1Q8NHS4 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
CLHC1Q8NHS4 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CLHC1Q8NHS4 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLHC1Q8NHS4 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
CLHC1Q8NHS4 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
CLHC1Q8NHS4 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
CLHC1Q8NHS4 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms