Protein–RNA interactions for Protein: Q6PIV2

FOXR1, Forkhead box protein R1, humanhuman

Predictions only

Length 292 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXR1Q6PIV2 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
FOXR1Q6PIV2 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
FOXR1Q6PIV2 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
FOXR1Q6PIV2 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
FOXR1Q6PIV2 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC21.5■■□□□ 1.03
FOXR1Q6PIV2 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
FOXR1Q6PIV2 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
FOXR1Q6PIV2 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
FOXR1Q6PIV2 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
FOXR1Q6PIV2 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
FOXR1Q6PIV2 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC21.5■■□□□ 1.03
FOXR1Q6PIV2 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
FOXR1Q6PIV2 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC21.5■■□□□ 1.03
FOXR1Q6PIV2 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC21.5■■□□□ 1.03
FOXR1Q6PIV2 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC21.5■■□□□ 1.03
FOXR1Q6PIV2 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC21.5■■□□□ 1.03
FOXR1Q6PIV2 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
FOXR1Q6PIV2 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
FOXR1Q6PIV2 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
FOXR1Q6PIV2 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC21.5■■□□□ 1.03
FOXR1Q6PIV2 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
FOXR1Q6PIV2 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
FOXR1Q6PIV2 AC018445.3-201ENST00000624177 1945 ntBASIC21.49■■□□□ 1.03
FOXR1Q6PIV2 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
FOXR1Q6PIV2 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
FOXR1Q6PIV2 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
FOXR1Q6PIV2 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC21.49■■□□□ 1.03
FOXR1Q6PIV2 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
FOXR1Q6PIV2 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
FOXR1Q6PIV2 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC21.49■■□□□ 1.03
FOXR1Q6PIV2 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
FOXR1Q6PIV2 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.49■■□□□ 1.03
FOXR1Q6PIV2 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
FOXR1Q6PIV2 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC21.49■■□□□ 1.03
FOXR1Q6PIV2 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
FOXR1Q6PIV2 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
FOXR1Q6PIV2 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.49■■□□□ 1.03
FOXR1Q6PIV2 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
FOXR1Q6PIV2 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
FOXR1Q6PIV2 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
FOXR1Q6PIV2 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.48■■□□□ 1.03
FOXR1Q6PIV2 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
FOXR1Q6PIV2 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
FOXR1Q6PIV2 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
FOXR1Q6PIV2 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
FOXR1Q6PIV2 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
FOXR1Q6PIV2 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
FOXR1Q6PIV2 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
FOXR1Q6PIV2 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
FOXR1Q6PIV2 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC21.48■■□□□ 1.03
FOXR1Q6PIV2 AICDA-202ENST00000537228 667 ntTSL 5 BASIC21.48■■□□□ 1.03
FOXR1Q6PIV2 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
FOXR1Q6PIV2 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
FOXR1Q6PIV2 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.48■■□□□ 1.03
FOXR1Q6PIV2 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
FOXR1Q6PIV2 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
FOXR1Q6PIV2 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
FOXR1Q6PIV2 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC21.48■■□□□ 1.03
FOXR1Q6PIV2 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 LETM1P2-201ENST00000597330 2178 ntBASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 AC004911.1-201ENST00000416316 871 ntBASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 GXYLT1P2-201ENST00000433312 1230 ntBASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 DUX4L2-201ENST00000561772 1275 ntBASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 RAB43-208ENST00000615093 783 ntTSL 5 BASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 DUX4L6-201ENST00000626483 1275 ntBASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 DUX4L1-201ENST00000627662 1275 ntBASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 DUX4L8-201ENST00000629013 1275 ntBASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 DUX4L3-201ENST00000630187 1275 ntBASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 DUX4L7-201ENST00000630678 1275 ntBASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 DUX4L5-201ENST00000630834 1275 ntBASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 SMG8-203ENST00000578922 2178 ntBASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC21.47■■□□□ 1.03
FOXR1Q6PIV2 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
FOXR1Q6PIV2 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
FOXR1Q6PIV2 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
FOXR1Q6PIV2 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
FOXR1Q6PIV2 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
FOXR1Q6PIV2 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms