Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
VPS13DQ5THJ4 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
VPS13DQ5THJ4 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
VPS13DQ5THJ4 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
VPS13DQ5THJ4 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
VPS13DQ5THJ4 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
VPS13DQ5THJ4 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC14.1□□□□□ -0.15
VPS13DQ5THJ4 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC14.1□□□□□ -0.15
VPS13DQ5THJ4 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
VPS13DQ5THJ4 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
VPS13DQ5THJ4 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC14.1□□□□□ -0.15
VPS13DQ5THJ4 AC080038.3-201ENST00000623346 1952 ntBASIC14.1□□□□□ -0.15
VPS13DQ5THJ4 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13DQ5THJ4 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC14.09□□□□□ -0.15
VPS13DQ5THJ4 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC14.09□□□□□ -0.15
VPS13DQ5THJ4 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC14.09□□□□□ -0.15
VPS13DQ5THJ4 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13DQ5THJ4 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC14.09□□□□□ -0.15
VPS13DQ5THJ4 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC14.09□□□□□ -0.15
VPS13DQ5THJ4 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13DQ5THJ4 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
VPS13DQ5THJ4 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13DQ5THJ4 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13DQ5THJ4 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13DQ5THJ4 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC14.09□□□□□ -0.15
VPS13DQ5THJ4 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13DQ5THJ4 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13DQ5THJ4 PTPA-214ENST00000423100 988 ntTSL 2 BASIC14.09□□□□□ -0.15
VPS13DQ5THJ4 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
VPS13DQ5THJ4 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
VPS13DQ5THJ4 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13DQ5THJ4 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC14.09□□□□□ -0.15
VPS13DQ5THJ4 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
VPS13DQ5THJ4 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13DQ5THJ4 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC14.08□□□□□ -0.15
VPS13DQ5THJ4 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
VPS13DQ5THJ4 AL353708.3-201ENST00000610272 989 ntBASIC14.08□□□□□ -0.15
VPS13DQ5THJ4 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
VPS13DQ5THJ4 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC14.08□□□□□ -0.16
VPS13DQ5THJ4 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
VPS13DQ5THJ4 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC14.08□□□□□ -0.16
VPS13DQ5THJ4 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS13DQ5THJ4 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
VPS13DQ5THJ4 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS13DQ5THJ4 SERF2-207ENST00000409614 582 ntTSL 2 BASIC14.08□□□□□ -0.16
VPS13DQ5THJ4 AL355075.4-201ENST00000554988 638 ntBASIC14.08□□□□□ -0.16
VPS13DQ5THJ4 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC14.08□□□□□ -0.16
VPS13DQ5THJ4 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC14.08□□□□□ -0.16
VPS13DQ5THJ4 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
VPS13DQ5THJ4 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC14.08□□□□□ -0.16
VPS13DQ5THJ4 NXN-202ENST00000537628 1340 ntTSL 3 BASIC14.08□□□□□ -0.16
VPS13DQ5THJ4 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
VPS13DQ5THJ4 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC14.08□□□□□ -0.16
VPS13DQ5THJ4 KRT18P21-201ENST00000515767 1272 ntBASIC14.08□□□□□ -0.16
VPS13DQ5THJ4 RARRES2P10-201ENST00000564312 460 ntBASIC14.08□□□□□ -0.16
VPS13DQ5THJ4 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
VPS13DQ5THJ4 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS13DQ5THJ4 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC14.07□□□□□ -0.16
VPS13DQ5THJ4 OR2A1-AS1-207ENST00000486094 819 ntBASIC14.07□□□□□ -0.16
VPS13DQ5THJ4 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC14.07□□□□□ -0.16
VPS13DQ5THJ4 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC14.07□□□□□ -0.16
VPS13DQ5THJ4 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC14.07□□□□□ -0.16
VPS13DQ5THJ4 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
VPS13DQ5THJ4 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS13DQ5THJ4 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS13DQ5THJ4 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC14.07□□□□□ -0.16
VPS13DQ5THJ4 KRT17P3-201ENST00000420566 1262 ntBASIC14.07□□□□□ -0.16
VPS13DQ5THJ4 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
VPS13DQ5THJ4 GRAP-204ENST00000573099 846 ntTSL 3 BASIC14.07□□□□□ -0.16
VPS13DQ5THJ4 AC124016.1-201ENST00000609552 612 ntBASIC14.07□□□□□ -0.16
VPS13DQ5THJ4 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
VPS13DQ5THJ4 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC14.07□□□□□ -0.16
VPS13DQ5THJ4 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS13DQ5THJ4 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS13DQ5THJ4 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC14.07□□□□□ -0.16
VPS13DQ5THJ4 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
VPS13DQ5THJ4 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS13DQ5THJ4 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
VPS13DQ5THJ4 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS13DQ5THJ4 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
VPS13DQ5THJ4 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS13DQ5THJ4 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS13DQ5THJ4 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC14.06□□□□□ -0.16
VPS13DQ5THJ4 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC14.06□□□□□ -0.16
VPS13DQ5THJ4 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
VPS13DQ5THJ4 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC14.06□□□□□ -0.16
VPS13DQ5THJ4 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC14.06□□□□□ -0.16
VPS13DQ5THJ4 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
VPS13DQ5THJ4 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC14.06□□□□□ -0.16
VPS13DQ5THJ4 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC14.06□□□□□ -0.16
VPS13DQ5THJ4 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS13DQ5THJ4 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC14.06□□□□□ -0.16
VPS13DQ5THJ4 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
VPS13DQ5THJ4 LY6E-205ENST00000519611 635 ntTSL 3 BASIC14.06□□□□□ -0.16
VPS13DQ5THJ4 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
VPS13DQ5THJ4 TK2-204ENST00000525974 1178 ntTSL 2 BASIC14.06□□□□□ -0.16
VPS13DQ5THJ4 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS13DQ5THJ4 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS13DQ5THJ4 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
VPS13DQ5THJ4 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms