Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC17.11■□□□□ 0.33
PDLIM3Q53GG5 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PDLIM3Q53GG5 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC17.11■□□□□ 0.33
PDLIM3Q53GG5 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC17.11■□□□□ 0.33
PDLIM3Q53GG5 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
PDLIM3Q53GG5 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PDLIM3Q53GG5 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
PDLIM3Q53GG5 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
PDLIM3Q53GG5 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PDLIM3Q53GG5 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PDLIM3Q53GG5 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
PDLIM3Q53GG5 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PDLIM3Q53GG5 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
PDLIM3Q53GG5 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC17.1■□□□□ 0.33
PDLIM3Q53GG5 AC016769.1-201ENST00000409132 1010 ntBASIC17.1■□□□□ 0.33
PDLIM3Q53GG5 AC006015.1-201ENST00000429970 570 ntBASIC17.1■□□□□ 0.33
PDLIM3Q53GG5 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PDLIM3Q53GG5 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC17.1■□□□□ 0.33
PDLIM3Q53GG5 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC17.1■□□□□ 0.33
PDLIM3Q53GG5 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC17.1■□□□□ 0.33
PDLIM3Q53GG5 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
PDLIM3Q53GG5 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PDLIM3Q53GG5 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
PDLIM3Q53GG5 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PDLIM3Q53GG5 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PDLIM3Q53GG5 AF106564.1-201ENST00000607058 2553 ntBASIC17.1■□□□□ 0.33
PDLIM3Q53GG5 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PDLIM3Q53GG5 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.1■□□□□ 0.33
PDLIM3Q53GG5 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PDLIM3Q53GG5 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
PDLIM3Q53GG5 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PDLIM3Q53GG5 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PDLIM3Q53GG5 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
PDLIM3Q53GG5 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
PDLIM3Q53GG5 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PDLIM3Q53GG5 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PDLIM3Q53GG5 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.09■□□□□ 0.33
PDLIM3Q53GG5 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC17.09■□□□□ 0.33
PDLIM3Q53GG5 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PDLIM3Q53GG5 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PDLIM3Q53GG5 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC17.09■□□□□ 0.33
PDLIM3Q53GG5 CBFB-203ENST00000561924 584 ntTSL 5 BASIC17.09■□□□□ 0.33
PDLIM3Q53GG5 AL034346.1-201ENST00000568244 1277 ntBASIC17.09■□□□□ 0.33
PDLIM3Q53GG5 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC17.09■□□□□ 0.33
PDLIM3Q53GG5 GAS2L1P2-201ENST00000436355 1356 ntBASIC17.09■□□□□ 0.33
PDLIM3Q53GG5 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PDLIM3Q53GG5 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PDLIM3Q53GG5 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC17.09■□□□□ 0.33
PDLIM3Q53GG5 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
PDLIM3Q53GG5 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PDLIM3Q53GG5 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
PDLIM3Q53GG5 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PDLIM3Q53GG5 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
PDLIM3Q53GG5 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC17.08■□□□□ 0.33
PDLIM3Q53GG5 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PDLIM3Q53GG5 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
PDLIM3Q53GG5 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC17.08■□□□□ 0.32
PDLIM3Q53GG5 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.08■□□□□ 0.32
PDLIM3Q53GG5 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
PDLIM3Q53GG5 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC17.08■□□□□ 0.32
PDLIM3Q53GG5 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
PDLIM3Q53GG5 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC17.08■□□□□ 0.32
PDLIM3Q53GG5 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
PDLIM3Q53GG5 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC17.08■□□□□ 0.32
PDLIM3Q53GG5 APTR-205ENST00000447009 902 ntTSL 2 BASIC17.08■□□□□ 0.32
PDLIM3Q53GG5 AC010141.3-201ENST00000456659 717 ntBASIC17.08■□□□□ 0.32
PDLIM3Q53GG5 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC17.08■□□□□ 0.32
PDLIM3Q53GG5 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PDLIM3Q53GG5 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PDLIM3Q53GG5 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
PDLIM3Q53GG5 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
PDLIM3Q53GG5 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
PDLIM3Q53GG5 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PDLIM3Q53GG5 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC17.07■□□□□ 0.32
PDLIM3Q53GG5 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
PDLIM3Q53GG5 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PDLIM3Q53GG5 AC073130.3-201ENST00000624389 2278 ntBASIC17.07■□□□□ 0.32
PDLIM3Q53GG5 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PDLIM3Q53GG5 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PDLIM3Q53GG5 NT5C3AP1-201ENST00000394500 1012 ntBASIC17.07■□□□□ 0.32
PDLIM3Q53GG5 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC17.07■□□□□ 0.32
PDLIM3Q53GG5 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC17.07■□□□□ 0.32
PDLIM3Q53GG5 AC012414.1-201ENST00000556676 535 ntBASIC17.07■□□□□ 0.32
PDLIM3Q53GG5 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC17.07■□□□□ 0.32
PDLIM3Q53GG5 MIR3181-201ENST00000578512 73 ntBASIC17.07■□□□□ 0.32
PDLIM3Q53GG5 TERF1P2-201ENST00000583350 1212 ntBASIC17.07■□□□□ 0.32
PDLIM3Q53GG5 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PDLIM3Q53GG5 AL354811.1-201ENST00000610286 706 ntBASIC17.07■□□□□ 0.32
PDLIM3Q53GG5 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC17.07■□□□□ 0.32
PDLIM3Q53GG5 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PDLIM3Q53GG5 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PDLIM3Q53GG5 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PDLIM3Q53GG5 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
PDLIM3Q53GG5 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC17.06■□□□□ 0.32
PDLIM3Q53GG5 PARN-205ENST00000539279 1557 ntTSL 2 BASIC17.06■□□□□ 0.32
PDLIM3Q53GG5 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDLIM3Q53GG5 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
PDLIM3Q53GG5 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
PDLIM3Q53GG5 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
PDLIM3Q53GG5 LINC01521-201ENST00000504184 1943 ntBASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms