Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
CCDC144BQ3MJ40 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
CCDC144BQ3MJ40 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC24.04■■□□□ 1.44
CCDC144BQ3MJ40 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
CCDC144BQ3MJ40 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
CCDC144BQ3MJ40 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
CCDC144BQ3MJ40 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC24.04■■□□□ 1.44
CCDC144BQ3MJ40 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC24.04■■□□□ 1.44
CCDC144BQ3MJ40 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC24.04■■□□□ 1.44
CCDC144BQ3MJ40 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC24.04■■□□□ 1.44
CCDC144BQ3MJ40 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC24.04■■□□□ 1.44
CCDC144BQ3MJ40 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
CCDC144BQ3MJ40 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
CCDC144BQ3MJ40 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC24.04■■□□□ 1.44
CCDC144BQ3MJ40 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC24.04■■□□□ 1.44
CCDC144BQ3MJ40 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
CCDC144BQ3MJ40 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
CCDC144BQ3MJ40 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
CCDC144BQ3MJ40 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC24.03■■□□□ 1.44
CCDC144BQ3MJ40 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CCDC144BQ3MJ40 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC24.03■■□□□ 1.44
CCDC144BQ3MJ40 FAM201B-201ENST00000458407 597 ntBASIC24.03■■□□□ 1.44
CCDC144BQ3MJ40 MIR4758-201ENST00000577688 71 ntBASIC24.03■■□□□ 1.44
CCDC144BQ3MJ40 MARS-234ENST00000630571 216 ntTSL 5 BASIC24.03■■□□□ 1.44
CCDC144BQ3MJ40 MARS-235ENST00000630803 183 ntTSL 3 BASIC24.03■■□□□ 1.44
CCDC144BQ3MJ40 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC24.03■■□□□ 1.44
CCDC144BQ3MJ40 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CCDC144BQ3MJ40 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CCDC144BQ3MJ40 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CCDC144BQ3MJ40 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC24.03■■□□□ 1.44
CCDC144BQ3MJ40 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CCDC144BQ3MJ40 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
CCDC144BQ3MJ40 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
CCDC144BQ3MJ40 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC24.03■■□□□ 1.44
CCDC144BQ3MJ40 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
CCDC144BQ3MJ40 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CCDC144BQ3MJ40 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
CCDC144BQ3MJ40 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
CCDC144BQ3MJ40 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC24.02■■□□□ 1.44
CCDC144BQ3MJ40 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC24.02■■□□□ 1.44
CCDC144BQ3MJ40 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC24.02■■□□□ 1.44
CCDC144BQ3MJ40 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CCDC144BQ3MJ40 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC24.02■■□□□ 1.44
CCDC144BQ3MJ40 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC24.02■■□□□ 1.44
CCDC144BQ3MJ40 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC24.02■■□□□ 1.44
CCDC144BQ3MJ40 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CCDC144BQ3MJ40 BET1L-204ENST00000410108 637 ntTSL 3 BASIC24.02■■□□□ 1.44
CCDC144BQ3MJ40 AC007322.4-201ENST00000509611 723 ntBASIC24.02■■□□□ 1.44
CCDC144BQ3MJ40 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC24.02■■□□□ 1.44
CCDC144BQ3MJ40 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC24.02■■□□□ 1.44
CCDC144BQ3MJ40 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC24.02■■□□□ 1.44
CCDC144BQ3MJ40 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC24.02■■□□□ 1.44
CCDC144BQ3MJ40 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
CCDC144BQ3MJ40 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
CCDC144BQ3MJ40 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CCDC144BQ3MJ40 MKRN4P-201ENST00000444706 1521 ntBASIC24.01■■□□□ 1.43
CCDC144BQ3MJ40 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
CCDC144BQ3MJ40 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC24.01■■□□□ 1.43
CCDC144BQ3MJ40 MIPEPP3-201ENST00000412105 444 ntBASIC24.01■■□□□ 1.43
CCDC144BQ3MJ40 PLLP-204ENST00000569059 665 ntTSL 3 BASIC24.01■■□□□ 1.43
CCDC144BQ3MJ40 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC24.01■■□□□ 1.43
CCDC144BQ3MJ40 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
CCDC144BQ3MJ40 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC24.01■■□□□ 1.43
CCDC144BQ3MJ40 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
CCDC144BQ3MJ40 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC24.01■■□□□ 1.43
CCDC144BQ3MJ40 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
CCDC144BQ3MJ40 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC24■■□□□ 1.43
CCDC144BQ3MJ40 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC24■■□□□ 1.43
CCDC144BQ3MJ40 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC24■■□□□ 1.43
CCDC144BQ3MJ40 PHB2-213ENST00000546111 858 ntTSL 2 BASIC24■■□□□ 1.43
CCDC144BQ3MJ40 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC24■■□□□ 1.43
CCDC144BQ3MJ40 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC24■■□□□ 1.43
CCDC144BQ3MJ40 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC24■■□□□ 1.43
CCDC144BQ3MJ40 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC24■■□□□ 1.43
CCDC144BQ3MJ40 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
CCDC144BQ3MJ40 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC24■■□□□ 1.43
CCDC144BQ3MJ40 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC24■■□□□ 1.43
CCDC144BQ3MJ40 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC24■■□□□ 1.43
CCDC144BQ3MJ40 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC24■■□□□ 1.43
CCDC144BQ3MJ40 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
CCDC144BQ3MJ40 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
CCDC144BQ3MJ40 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
CCDC144BQ3MJ40 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC24■■□□□ 1.43
CCDC144BQ3MJ40 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
CCDC144BQ3MJ40 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC23.99■■□□□ 1.43
CCDC144BQ3MJ40 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
CCDC144BQ3MJ40 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC23.99■■□□□ 1.43
CCDC144BQ3MJ40 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
CCDC144BQ3MJ40 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
CCDC144BQ3MJ40 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC23.99■■□□□ 1.43
CCDC144BQ3MJ40 OR10C1-204ENST00000622521 1039 ntBASIC23.99■■□□□ 1.43
CCDC144BQ3MJ40 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC23.99■■□□□ 1.43
CCDC144BQ3MJ40 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
CCDC144BQ3MJ40 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC23.99■■□□□ 1.43
CCDC144BQ3MJ40 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CCDC144BQ3MJ40 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
CCDC144BQ3MJ40 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC144BQ3MJ40 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC144BQ3MJ40 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC144BQ3MJ40 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms