Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 WT1-AS_3.1-201ENST00000613262 234 ntBASIC19.22■□□□□ 0.67
RNF4P78317 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
RNF4P78317 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
RNF4P78317 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RNF4P78317 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RNF4P78317 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.22■□□□□ 0.67
RNF4P78317 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.22■□□□□ 0.67
RNF4P78317 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RNF4P78317 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.22■□□□□ 0.67
RNF4P78317 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC19.22■□□□□ 0.67
RNF4P78317 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RNF4P78317 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.21■□□□□ 0.67
RNF4P78317 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RNF4P78317 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.21■□□□□ 0.67
RNF4P78317 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF4P78317 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF4P78317 GPX1P1-201ENST00000388829 606 ntBASIC19.21■□□□□ 0.67
RNF4P78317 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.21■□□□□ 0.67
RNF4P78317 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
RNF4P78317 CDV3P1-201ENST00000471403 739 ntBASIC19.21■□□□□ 0.67
RNF4P78317 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.21■□□□□ 0.67
RNF4P78317 AC083906.2-201ENST00000511578 360 ntBASIC19.21■□□□□ 0.67
RNF4P78317 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
RNF4P78317 AL121832.2-201ENST00000610979 668 ntBASIC19.21■□□□□ 0.67
RNF4P78317 AC008694.1-202ENST00000636953 945 ntBASIC19.21■□□□□ 0.67
RNF4P78317 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
RNF4P78317 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
RNF4P78317 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
RNF4P78317 AL024507.2-201ENST00000606070 2574 ntBASIC19.21■□□□□ 0.67
RNF4P78317 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
RNF4P78317 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF4P78317 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF4P78317 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RNF4P78317 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
RNF4P78317 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
RNF4P78317 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
RNF4P78317 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC19.2■□□□□ 0.66
RNF4P78317 AF201337.1-201ENST00000520239 748 ntBASIC19.2■□□□□ 0.66
RNF4P78317 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.2■□□□□ 0.66
RNF4P78317 AC016405.3-201ENST00000607710 860 ntBASIC19.2■□□□□ 0.66
RNF4P78317 OR10C1-204ENST00000622521 1039 ntBASIC19.2■□□□□ 0.66
RNF4P78317 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.2■□□□□ 0.66
RNF4P78317 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.2■□□□□ 0.66
RNF4P78317 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
RNF4P78317 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
RNF4P78317 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RNF4P78317 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
RNF4P78317 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.2■□□□□ 0.66
RNF4P78317 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
RNF4P78317 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
RNF4P78317 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RNF4P78317 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
RNF4P78317 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.19■□□□□ 0.66
RNF4P78317 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RNF4P78317 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RNF4P78317 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.19■□□□□ 0.66
RNF4P78317 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
RNF4P78317 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RNF4P78317 METTL15-202ENST00000403099 795 ntTSL 5 BASIC19.19■□□□□ 0.66
RNF4P78317 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
RNF4P78317 HLA-L-209ENST00000420110 1011 ntBASIC19.19■□□□□ 0.66
RNF4P78317 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
RNF4P78317 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
RNF4P78317 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.19■□□□□ 0.66
RNF4P78317 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RNF4P78317 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RNF4P78317 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RNF4P78317 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.19■□□□□ 0.66
RNF4P78317 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.19■□□□□ 0.66
RNF4P78317 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
RNF4P78317 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RNF4P78317 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RNF4P78317 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RNF4P78317 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RNF4P78317 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC19.18■□□□□ 0.66
RNF4P78317 RARRES2P4-201ENST00000514074 484 ntBASIC19.18■□□□□ 0.66
RNF4P78317 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RNF4P78317 AC105036.2-201ENST00000569468 176 ntBASIC19.18■□□□□ 0.66
RNF4P78317 FAM21FP-204ENST00000608637 956 ntBASIC19.18■□□□□ 0.66
RNF4P78317 AL109923.1-201ENST00000618799 583 ntBASIC19.18■□□□□ 0.66
RNF4P78317 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.18■□□□□ 0.66
RNF4P78317 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RNF4P78317 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
RNF4P78317 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RNF4P78317 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RNF4P78317 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RNF4P78317 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
RNF4P78317 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RNF4P78317 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RNF4P78317 AC116050.2-201ENST00000612102 1779 ntBASIC19.17■□□□□ 0.66
RNF4P78317 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RNF4P78317 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
RNF4P78317 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RNF4P78317 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
RNF4P78317 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.17■□□□□ 0.66
RNF4P78317 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.17■□□□□ 0.66
RNF4P78317 AC007322.3-201ENST00000426526 701 ntBASIC19.17■□□□□ 0.66
RNF4P78317 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RNF4P78317 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.17■□□□□ 0.66
RNF4P78317 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 63.3 ms