Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLRN1P58418 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLRN1P58418 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLRN1P58418 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CLRN1P58418 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
CLRN1P58418 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CLRN1P58418 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLRN1P58418 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLRN1P58418 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLRN1P58418 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CLRN1P58418 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CLRN1P58418 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
CLRN1P58418 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLRN1P58418 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLRN1P58418 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
CLRN1P58418 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC18.48■□□□□ 0.55
CLRN1P58418 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLRN1P58418 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLRN1P58418 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CLRN1P58418 KRT19P1-201ENST00000405746 1186 ntBASIC18.48■□□□□ 0.55
CLRN1P58418 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC18.48■□□□□ 0.55
CLRN1P58418 GALNS-213ENST00000569433 723 ntTSL 3 BASIC18.48■□□□□ 0.55
CLRN1P58418 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC18.48■□□□□ 0.55
CLRN1P58418 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC18.48■□□□□ 0.55
CLRN1P58418 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLRN1P58418 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.48■□□□□ 0.55
CLRN1P58418 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLRN1P58418 AC019069.1-201ENST00000610008 1333 ntBASIC18.48■□□□□ 0.55
CLRN1P58418 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLRN1P58418 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLRN1P58418 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC18.47■□□□□ 0.55
CLRN1P58418 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
CLRN1P58418 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLRN1P58418 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.47■□□□□ 0.55
CLRN1P58418 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
CLRN1P58418 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLRN1P58418 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLRN1P58418 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC18.47■□□□□ 0.55
CLRN1P58418 AC121338.2-201ENST00000622535 1744 ntBASIC18.47■□□□□ 0.55
CLRN1P58418 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLRN1P58418 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
CLRN1P58418 AC097381.1-201ENST00000429019 1296 ntBASIC18.47■□□□□ 0.55
CLRN1P58418 AC034268.1-201ENST00000441047 882 ntBASIC18.47■□□□□ 0.55
CLRN1P58418 AC245052.3-201ENST00000450182 901 ntBASIC18.47■□□□□ 0.55
CLRN1P58418 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CLRN1P58418 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC18.47■□□□□ 0.55
CLRN1P58418 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC18.47■□□□□ 0.55
CLRN1P58418 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CLRN1P58418 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
CLRN1P58418 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLRN1P58418 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CLRN1P58418 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLRN1P58418 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLRN1P58418 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CLRN1P58418 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC18.46■□□□□ 0.55
CLRN1P58418 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLRN1P58418 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLRN1P58418 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLRN1P58418 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CLRN1P58418 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
CLRN1P58418 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC18.46■□□□□ 0.55
CLRN1P58418 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CLRN1P58418 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLRN1P58418 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC18.46■□□□□ 0.55
CLRN1P58418 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLRN1P58418 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLRN1P58418 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLRN1P58418 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CLRN1P58418 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CLRN1P58418 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CLRN1P58418 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CLRN1P58418 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CLRN1P58418 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CLRN1P58418 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CLRN1P58418 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC18.45■□□□□ 0.54
CLRN1P58418 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
CLRN1P58418 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CLRN1P58418 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
CLRN1P58418 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CLRN1P58418 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC18.45■□□□□ 0.54
CLRN1P58418 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
CLRN1P58418 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CLRN1P58418 KRT18P20-201ENST00000548986 1279 ntBASIC18.45■□□□□ 0.54
CLRN1P58418 SLC7A5P2-201ENST00000553010 536 ntBASIC18.45■□□□□ 0.54
CLRN1P58418 PLD4-205ENST00000553861 667 ntTSL 2 BASIC18.45■□□□□ 0.54
CLRN1P58418 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC18.45■□□□□ 0.54
CLRN1P58418 MIR6821-201ENST00000617625 74 ntBASIC18.45■□□□□ 0.54
CLRN1P58418 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
CLRN1P58418 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CLRN1P58418 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CLRN1P58418 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CLRN1P58418 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC18.45■□□□□ 0.54
CLRN1P58418 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CLRN1P58418 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.45■□□□□ 0.54
CLRN1P58418 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CLRN1P58418 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CLRN1P58418 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CLRN1P58418 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
CLRN1P58418 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CLRN1P58418 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms