Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLDN9O95484 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLDN9O95484 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLDN9O95484 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLDN9O95484 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.03■□□□□ 0.8
CLDN9O95484 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.03■□□□□ 0.8
CLDN9O95484 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLDN9O95484 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLDN9O95484 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.03■□□□□ 0.8
CLDN9O95484 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC20.03■□□□□ 0.8
CLDN9O95484 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.03■□□□□ 0.8
CLDN9O95484 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC20.03■□□□□ 0.8
CLDN9O95484 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CLDN9O95484 ZNRF2P3-201ENST00000424200 374 ntBASIC20.03■□□□□ 0.8
CLDN9O95484 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.03■□□□□ 0.8
CLDN9O95484 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.03■□□□□ 0.8
CLDN9O95484 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.03■□□□□ 0.8
CLDN9O95484 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLDN9O95484 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLDN9O95484 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CLDN9O95484 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CLDN9O95484 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
CLDN9O95484 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CLDN9O95484 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
CLDN9O95484 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC20.02■□□□□ 0.8
CLDN9O95484 LINC01006-201ENST00000333319 2292 ntBASIC20.02■□□□□ 0.8
CLDN9O95484 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLDN9O95484 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CLDN9O95484 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLDN9O95484 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
CLDN9O95484 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
CLDN9O95484 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLDN9O95484 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC20.02■□□□□ 0.8
CLDN9O95484 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
CLDN9O95484 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.02■□□□□ 0.8
CLDN9O95484 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC20.02■□□□□ 0.8
CLDN9O95484 CCDC92B-201ENST00000575506 885 ntBASIC20.02■□□□□ 0.8
CLDN9O95484 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CLDN9O95484 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20.02■□□□□ 0.8
CLDN9O95484 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLDN9O95484 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLDN9O95484 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
CLDN9O95484 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
CLDN9O95484 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLDN9O95484 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CLDN9O95484 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLDN9O95484 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLDN9O95484 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLDN9O95484 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.02■□□□□ 0.8
CLDN9O95484 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
CLDN9O95484 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CLDN9O95484 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
CLDN9O95484 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
CLDN9O95484 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.79
CLDN9O95484 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
CLDN9O95484 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CLDN9O95484 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLDN9O95484 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.01■□□□□ 0.79
CLDN9O95484 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLDN9O95484 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CLDN9O95484 COX20-201ENST00000366528 568 ntTSL 2 BASIC20.01■□□□□ 0.79
CLDN9O95484 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
CLDN9O95484 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC20.01■□□□□ 0.79
CLDN9O95484 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CLDN9O95484 TESC-206ENST00000541210 936 ntTSL 3 BASIC20.01■□□□□ 0.79
CLDN9O95484 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC20.01■□□□□ 0.79
CLDN9O95484 AP001160.3-201ENST00000601484 763 ntBASIC20.01■□□□□ 0.79
CLDN9O95484 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
CLDN9O95484 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLDN9O95484 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CLDN9O95484 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLDN9O95484 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CLDN9O95484 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
CLDN9O95484 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CLDN9O95484 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CLDN9O95484 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
CLDN9O95484 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CLDN9O95484 AC007225.1-201ENST00000566331 1836 ntBASIC20■□□□□ 0.79
CLDN9O95484 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CLDN9O95484 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
CLDN9O95484 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC20■□□□□ 0.79
CLDN9O95484 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC20■□□□□ 0.79
CLDN9O95484 KRT18P14-201ENST00000534205 1250 ntBASIC20■□□□□ 0.79
CLDN9O95484 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20■□□□□ 0.79
CLDN9O95484 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC20■□□□□ 0.79
CLDN9O95484 RARRES2P11-201ENST00000635158 484 ntBASIC20■□□□□ 0.79
CLDN9O95484 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20■□□□□ 0.79
CLDN9O95484 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CLDN9O95484 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
CLDN9O95484 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20■□□□□ 0.79
CLDN9O95484 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20■□□□□ 0.79
CLDN9O95484 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
CLDN9O95484 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20■□□□□ 0.79
CLDN9O95484 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20■□□□□ 0.79
CLDN9O95484 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLDN9O95484 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
CLDN9O95484 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLDN9O95484 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.99■□□□□ 0.79
CLDN9O95484 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLDN9O95484 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms