Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SEMA3DO95025 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SEMA3DO95025 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.82■□□□□ 0.76
SEMA3DO95025 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SEMA3DO95025 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SEMA3DO95025 EXOC3-AS1-202ENST00000623673 1663 ntBASIC19.81■□□□□ 0.76
SEMA3DO95025 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
SEMA3DO95025 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SEMA3DO95025 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.81■□□□□ 0.76
SEMA3DO95025 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SEMA3DO95025 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SEMA3DO95025 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.81■□□□□ 0.76
SEMA3DO95025 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC19.81■□□□□ 0.76
SEMA3DO95025 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.81■□□□□ 0.76
SEMA3DO95025 PLD4-205ENST00000553861 667 ntTSL 2 BASIC19.81■□□□□ 0.76
SEMA3DO95025 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SEMA3DO95025 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SEMA3DO95025 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SEMA3DO95025 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SEMA3DO95025 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.81■□□□□ 0.76
SEMA3DO95025 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
SEMA3DO95025 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SEMA3DO95025 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SEMA3DO95025 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SEMA3DO95025 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SEMA3DO95025 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.8■□□□□ 0.76
SEMA3DO95025 AC121338.2-201ENST00000622535 1744 ntBASIC19.8■□□□□ 0.76
SEMA3DO95025 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SEMA3DO95025 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
SEMA3DO95025 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SEMA3DO95025 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SEMA3DO95025 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SEMA3DO95025 SLC7A5P1-201ENST00000568957 537 ntBASIC19.8■□□□□ 0.76
SEMA3DO95025 KRT18P61-201ENST00000585825 1298 ntBASIC19.8■□□□□ 0.76
SEMA3DO95025 RARRES2P11-201ENST00000635158 484 ntBASIC19.8■□□□□ 0.76
SEMA3DO95025 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SEMA3DO95025 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SEMA3DO95025 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SEMA3DO95025 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.8■□□□□ 0.76
SEMA3DO95025 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SEMA3DO95025 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.8■□□□□ 0.76
SEMA3DO95025 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SEMA3DO95025 AC006128.1-201ENST00000624704 1661 ntBASIC19.79■□□□□ 0.76
SEMA3DO95025 AC092667.1-201ENST00000434301 2586 ntBASIC19.79■□□□□ 0.76
SEMA3DO95025 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SEMA3DO95025 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
SEMA3DO95025 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC19.79■□□□□ 0.76
SEMA3DO95025 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.79■□□□□ 0.76
SEMA3DO95025 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC19.79■□□□□ 0.76
SEMA3DO95025 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
SEMA3DO95025 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.79■□□□□ 0.76
SEMA3DO95025 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
SEMA3DO95025 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SEMA3DO95025 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SEMA3DO95025 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SEMA3DO95025 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SEMA3DO95025 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
SEMA3DO95025 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
SEMA3DO95025 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.78■□□□□ 0.76
SEMA3DO95025 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SEMA3DO95025 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SEMA3DO95025 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SEMA3DO95025 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SEMA3DO95025 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SEMA3DO95025 HACD1-201ENST00000326961 773 ntTSL 2 BASIC19.78■□□□□ 0.76
SEMA3DO95025 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SEMA3DO95025 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.78■□□□□ 0.76
SEMA3DO95025 SLC7A5P2-201ENST00000553010 536 ntBASIC19.78■□□□□ 0.76
SEMA3DO95025 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SEMA3DO95025 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SEMA3DO95025 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
SEMA3DO95025 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SEMA3DO95025 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SEMA3DO95025 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SEMA3DO95025 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SEMA3DO95025 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SEMA3DO95025 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.78■□□□□ 0.76
SEMA3DO95025 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.78■□□□□ 0.76
SEMA3DO95025 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SEMA3DO95025 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SEMA3DO95025 PLK5-205ENST00000642079 1969 ntBASIC19.77■□□□□ 0.76
SEMA3DO95025 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SEMA3DO95025 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SEMA3DO95025 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SEMA3DO95025 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
SEMA3DO95025 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
SEMA3DO95025 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SEMA3DO95025 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
SEMA3DO95025 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SEMA3DO95025 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SEMA3DO95025 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC19.77■□□□□ 0.76
SEMA3DO95025 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.77■□□□□ 0.76
SEMA3DO95025 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC19.77■□□□□ 0.76
SEMA3DO95025 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.77■□□□□ 0.76
SEMA3DO95025 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.77■□□□□ 0.76
SEMA3DO95025 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SEMA3DO95025 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.77■□□□□ 0.76
SEMA3DO95025 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.77■□□□□ 0.76
SEMA3DO95025 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
SEMA3DO95025 AC011484.1-201ENST00000377652 1995 ntBASIC19.77■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms