Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 UNC93B3-201ENST00000308076 687 ntBASIC24.05■■□□□ 1.44
PRPF40AO75400 PTCHD3P2-201ENST00000424937 1205 ntBASIC24.05■■□□□ 1.44
PRPF40AO75400 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC24.05■■□□□ 1.44
PRPF40AO75400 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC24.05■■□□□ 1.44
PRPF40AO75400 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
PRPF40AO75400 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
PRPF40AO75400 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC24.05■■□□□ 1.44
PRPF40AO75400 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
PRPF40AO75400 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC24.04■■□□□ 1.44
PRPF40AO75400 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC24.04■■□□□ 1.44
PRPF40AO75400 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC24.04■■□□□ 1.44
PRPF40AO75400 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
PRPF40AO75400 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PRPF40AO75400 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
PRPF40AO75400 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC24.04■■□□□ 1.44
PRPF40AO75400 AL162377.1-201ENST00000618844 1793 ntBASIC24.04■■□□□ 1.44
PRPF40AO75400 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
PRPF40AO75400 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PRPF40AO75400 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
PRPF40AO75400 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC24.04■■□□□ 1.44
PRPF40AO75400 SERBP1P1-201ENST00000396021 1160 ntBASIC24.04■■□□□ 1.44
PRPF40AO75400 PBX2P1-201ENST00000493219 1291 ntBASIC24.04■■□□□ 1.44
PRPF40AO75400 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PRPF40AO75400 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC24.04■■□□□ 1.44
PRPF40AO75400 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PRPF40AO75400 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC24.04■■□□□ 1.44
PRPF40AO75400 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC24.04■■□□□ 1.44
PRPF40AO75400 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
PRPF40AO75400 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC24.04■■□□□ 1.44
PRPF40AO75400 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC24.04■■□□□ 1.44
PRPF40AO75400 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PRPF40AO75400 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PRPF40AO75400 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC24.04■■□□□ 1.44
PRPF40AO75400 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC24.03■■□□□ 1.44
PRPF40AO75400 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
PRPF40AO75400 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
PRPF40AO75400 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
PRPF40AO75400 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
PRPF40AO75400 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
PRPF40AO75400 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC24.03■■□□□ 1.44
PRPF40AO75400 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC24.03■■□□□ 1.44
PRPF40AO75400 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC24.03■■□□□ 1.44
PRPF40AO75400 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC24.03■■□□□ 1.44
PRPF40AO75400 AC011298.3-201ENST00000615796 283 ntBASIC24.03■■□□□ 1.44
PRPF40AO75400 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC24.03■■□□□ 1.44
PRPF40AO75400 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
PRPF40AO75400 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
PRPF40AO75400 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
PRPF40AO75400 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
PRPF40AO75400 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
PRPF40AO75400 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC24.02■■□□□ 1.44
PRPF40AO75400 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC24.02■■□□□ 1.44
PRPF40AO75400 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC24.02■■□□□ 1.44
PRPF40AO75400 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC24.02■■□□□ 1.44
PRPF40AO75400 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
PRPF40AO75400 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
PRPF40AO75400 HES6-206ENST00000409574 738 ntTSL 2 BASIC24.02■■□□□ 1.44
PRPF40AO75400 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
PRPF40AO75400 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
PRPF40AO75400 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC24.02■■□□□ 1.44
PRPF40AO75400 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC24.02■■□□□ 1.44
PRPF40AO75400 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC24.02■■□□□ 1.44
PRPF40AO75400 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
PRPF40AO75400 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
PRPF40AO75400 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
PRPF40AO75400 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC24.01■■□□□ 1.43
PRPF40AO75400 RARG-204ENST00000543726 1779 ntTSL 2 BASIC24.01■■□□□ 1.43
PRPF40AO75400 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
PRPF40AO75400 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC24.01■■□□□ 1.43
PRPF40AO75400 FP700111.2-201ENST00000619190 1892 ntBASIC24.01■■□□□ 1.43
PRPF40AO75400 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
PRPF40AO75400 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
PRPF40AO75400 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC24.01■■□□□ 1.43
PRPF40AO75400 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
PRPF40AO75400 AP005435.1-201ENST00000529293 1178 ntBASIC24.01■■□□□ 1.43
PRPF40AO75400 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC24.01■■□□□ 1.43
PRPF40AO75400 AL136162.1-201ENST00000607711 1078 ntBASIC24.01■■□□□ 1.43
PRPF40AO75400 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC24.01■■□□□ 1.43
PRPF40AO75400 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
PRPF40AO75400 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
PRPF40AO75400 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC24.01■■□□□ 1.43
PRPF40AO75400 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PRPF40AO75400 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PRPF40AO75400 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC24■■□□□ 1.43
PRPF40AO75400 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
PRPF40AO75400 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PRPF40AO75400 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PRPF40AO75400 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC24■■□□□ 1.43
PRPF40AO75400 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC24■■□□□ 1.43
PRPF40AO75400 AC005837.3-201ENST00000612163 286 ntBASIC24■■□□□ 1.43
PRPF40AO75400 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC24■■□□□ 1.43
PRPF40AO75400 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
PRPF40AO75400 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PRPF40AO75400 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC24■■□□□ 1.43
PRPF40AO75400 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PRPF40AO75400 AC087289.5-201ENST00000586076 3175 ntBASIC23.99■■□□□ 1.43
PRPF40AO75400 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
PRPF40AO75400 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
PRPF40AO75400 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC23.99■■□□□ 1.43
PRPF40AO75400 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC23.99■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms