Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AC105036.2-201ENST00000569468 176 ntBASIC23.39■■□□□ 1.33
MSH4O15457 AL109923.1-201ENST00000618799 583 ntBASIC23.39■■□□□ 1.33
MSH4O15457 OR10C1-204ENST00000622521 1039 ntBASIC23.39■■□□□ 1.33
MSH4O15457 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC23.39■■□□□ 1.33
MSH4O15457 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.33
MSH4O15457 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
MSH4O15457 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
MSH4O15457 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
MSH4O15457 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC23.38■■□□□ 1.33
MSH4O15457 AC069236.1-201ENST00000604339 616 ntBASIC23.38■■□□□ 1.33
MSH4O15457 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC23.38■■□□□ 1.33
MSH4O15457 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
MSH4O15457 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC23.38■■□□□ 1.33
MSH4O15457 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC23.38■■□□□ 1.33
MSH4O15457 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
MSH4O15457 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC23.37■■□□□ 1.33
MSH4O15457 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
MSH4O15457 TSPY6P-201ENST00000448518 926 ntBASIC23.37■■□□□ 1.33
MSH4O15457 CDV3P1-201ENST00000471403 739 ntBASIC23.37■■□□□ 1.33
MSH4O15457 PBX1-209ENST00000485769 834 ntTSL 2 BASIC23.37■■□□□ 1.33
MSH4O15457 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
MSH4O15457 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
MSH4O15457 FAM21FP-204ENST00000608637 956 ntBASIC23.37■■□□□ 1.33
MSH4O15457 AC008694.1-202ENST00000636953 945 ntBASIC23.37■■□□□ 1.33
MSH4O15457 GAMT-205ENST00000640762 751 ntTSL 5 BASIC23.37■■□□□ 1.33
MSH4O15457 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
MSH4O15457 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
MSH4O15457 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC23.37■■□□□ 1.33
MSH4O15457 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
MSH4O15457 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
MSH4O15457 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
MSH4O15457 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
MSH4O15457 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
MSH4O15457 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC23.36■■□□□ 1.33
MSH4O15457 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
MSH4O15457 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC23.36■■□□□ 1.33
MSH4O15457 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
MSH4O15457 SAPCD2P1-201ENST00000395413 1184 ntBASIC23.36■■□□□ 1.33
MSH4O15457 AC007322.3-201ENST00000426526 701 ntBASIC23.36■■□□□ 1.33
MSH4O15457 CASP6-205ENST00000505486 538 ntTSL 4 BASIC23.36■■□□□ 1.33
MSH4O15457 MARS-234ENST00000630571 216 ntTSL 5 BASIC23.36■■□□□ 1.33
MSH4O15457 MARS-235ENST00000630803 183 ntTSL 3 BASIC23.36■■□□□ 1.33
MSH4O15457 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC23.36■■□□□ 1.33
MSH4O15457 AC116050.2-201ENST00000612102 1779 ntBASIC23.36■■□□□ 1.33
MSH4O15457 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
MSH4O15457 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC23.36■■□□□ 1.33
MSH4O15457 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
MSH4O15457 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
MSH4O15457 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
MSH4O15457 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
MSH4O15457 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
MSH4O15457 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC23.35■■□□□ 1.33
MSH4O15457 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
MSH4O15457 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
MSH4O15457 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
MSH4O15457 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
MSH4O15457 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
MSH4O15457 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
MSH4O15457 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
MSH4O15457 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
MSH4O15457 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
MSH4O15457 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
MSH4O15457 AL512625.2-201ENST00000417533 625 ntBASIC23.35■■□□□ 1.33
MSH4O15457 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC23.35■■□□□ 1.33
MSH4O15457 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC23.35■■□□□ 1.33
MSH4O15457 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC23.35■■□□□ 1.33
MSH4O15457 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC23.34■■□□□ 1.33
MSH4O15457 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
MSH4O15457 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
MSH4O15457 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
MSH4O15457 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
MSH4O15457 VMO1-204ENST00000441199 741 ntTSL 2 BASIC23.34■■□□□ 1.33
MSH4O15457 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC23.34■■□□□ 1.33
MSH4O15457 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC23.34■■□□□ 1.33
MSH4O15457 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
MSH4O15457 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
MSH4O15457 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
MSH4O15457 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
MSH4O15457 AC007375.3-201ENST00000600936 2314 ntBASIC23.33■■□□□ 1.33
MSH4O15457 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
MSH4O15457 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC23.33■■□□□ 1.33
MSH4O15457 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
MSH4O15457 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
MSH4O15457 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC23.33■■□□□ 1.33
MSH4O15457 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC23.33■■□□□ 1.33
MSH4O15457 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC23.33■■□□□ 1.32
MSH4O15457 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
MSH4O15457 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC23.33■■□□□ 1.32
MSH4O15457 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
MSH4O15457 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
MSH4O15457 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC23.32■■□□□ 1.32
MSH4O15457 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
MSH4O15457 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
MSH4O15457 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
MSH4O15457 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
MSH4O15457 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
MSH4O15457 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
MSH4O15457 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC23.32■■□□□ 1.32
MSH4O15457 AC010980.2-201ENST00000587099 1412 ntBASIC23.32■■□□□ 1.32
MSH4O15457 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms