Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.17■□□□□ 0.82
HDAC3O15379 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HDAC3O15379 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HDAC3O15379 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HDAC3O15379 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.17■□□□□ 0.82
HDAC3O15379 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.17■□□□□ 0.82
HDAC3O15379 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HDAC3O15379 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HDAC3O15379 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
HDAC3O15379 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.16■□□□□ 0.82
HDAC3O15379 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.16■□□□□ 0.82
HDAC3O15379 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HDAC3O15379 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
HDAC3O15379 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HDAC3O15379 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.16■□□□□ 0.82
HDAC3O15379 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.16■□□□□ 0.82
HDAC3O15379 TRIR-205ENST00000592273 783 ntTSL 3 BASIC20.16■□□□□ 0.82
HDAC3O15379 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HDAC3O15379 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.16■□□□□ 0.82
HDAC3O15379 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
HDAC3O15379 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HDAC3O15379 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HDAC3O15379 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.16■□□□□ 0.82
HDAC3O15379 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.16■□□□□ 0.82
HDAC3O15379 AC112907.3-201ENST00000577781 2400 ntBASIC20.16■□□□□ 0.82
HDAC3O15379 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HDAC3O15379 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.16■□□□□ 0.82
HDAC3O15379 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
HDAC3O15379 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
HDAC3O15379 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC20.16■□□□□ 0.82
HDAC3O15379 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.15■□□□□ 0.82
HDAC3O15379 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.15■□□□□ 0.82
HDAC3O15379 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
HDAC3O15379 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
HDAC3O15379 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HDAC3O15379 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HDAC3O15379 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
HDAC3O15379 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
HDAC3O15379 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HDAC3O15379 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
HDAC3O15379 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
HDAC3O15379 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.15■□□□□ 0.82
HDAC3O15379 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.15■□□□□ 0.82
HDAC3O15379 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.15■□□□□ 0.82
HDAC3O15379 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HDAC3O15379 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.15■□□□□ 0.82
HDAC3O15379 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.15■□□□□ 0.82
HDAC3O15379 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
HDAC3O15379 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
HDAC3O15379 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
HDAC3O15379 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HDAC3O15379 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
HDAC3O15379 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.14■□□□□ 0.81
HDAC3O15379 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
HDAC3O15379 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
HDAC3O15379 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20.14■□□□□ 0.81
HDAC3O15379 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.14■□□□□ 0.81
HDAC3O15379 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
HDAC3O15379 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HDAC3O15379 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HDAC3O15379 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
HDAC3O15379 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HDAC3O15379 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.14■□□□□ 0.81
HDAC3O15379 AC011484.1-201ENST00000377652 1995 ntBASIC20.14■□□□□ 0.81
HDAC3O15379 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
HDAC3O15379 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HDAC3O15379 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
HDAC3O15379 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
HDAC3O15379 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.13■□□□□ 0.81
HDAC3O15379 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.13■□□□□ 0.81
HDAC3O15379 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.13■□□□□ 0.81
HDAC3O15379 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HDAC3O15379 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
HDAC3O15379 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HDAC3O15379 AL356441.2-201ENST00000443009 864 ntBASIC20.13■□□□□ 0.81
HDAC3O15379 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.13■□□□□ 0.81
HDAC3O15379 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.13■□□□□ 0.81
HDAC3O15379 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HDAC3O15379 AC099778.1-201ENST00000568593 1911 ntBASIC20.13■□□□□ 0.81
HDAC3O15379 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
HDAC3O15379 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.13■□□□□ 0.81
HDAC3O15379 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.13■□□□□ 0.81
HDAC3O15379 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
HDAC3O15379 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HDAC3O15379 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HDAC3O15379 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HDAC3O15379 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HDAC3O15379 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HDAC3O15379 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HDAC3O15379 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
HDAC3O15379 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HDAC3O15379 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HDAC3O15379 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.12■□□□□ 0.81
HDAC3O15379 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HDAC3O15379 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
HDAC3O15379 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.12■□□□□ 0.81
HDAC3O15379 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.12■□□□□ 0.81
HDAC3O15379 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HDAC3O15379 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HDAC3O15379 AC005224.4-201ENST00000583262 1652 ntBASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms