Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 BX323043.1-201ENST00000641006 1765 ntBASIC18.04■□□□□ 0.48
TRAV1-2A0A0B4J238 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRAV1-2A0A0B4J238 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TRAV1-2A0A0B4J238 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.03■□□□□ 0.48
TRAV1-2A0A0B4J238 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV1-2A0A0B4J238 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC18.03■□□□□ 0.48
TRAV1-2A0A0B4J238 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
TRAV1-2A0A0B4J238 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV1-2A0A0B4J238 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV1-2A0A0B4J238 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.03■□□□□ 0.48
TRAV1-2A0A0B4J238 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV1-2A0A0B4J238 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV1-2A0A0B4J238 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV1-2A0A0B4J238 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV1-2A0A0B4J238 HES6-206ENST00000409574 738 ntTSL 2 BASIC18.03■□□□□ 0.48
TRAV1-2A0A0B4J238 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC18.03■□□□□ 0.48
TRAV1-2A0A0B4J238 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC18.03■□□□□ 0.48
TRAV1-2A0A0B4J238 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV1-2A0A0B4J238 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC18.03■□□□□ 0.48
TRAV1-2A0A0B4J238 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC18.03■□□□□ 0.48
TRAV1-2A0A0B4J238 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TRAV1-2A0A0B4J238 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC18.03■□□□□ 0.48
TRAV1-2A0A0B4J238 AC011484.1-201ENST00000377652 1995 ntBASIC18.02■□□□□ 0.48
TRAV1-2A0A0B4J238 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TRAV1-2A0A0B4J238 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
TRAV1-2A0A0B4J238 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRAV1-2A0A0B4J238 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRAV1-2A0A0B4J238 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TRAV1-2A0A0B4J238 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.02■□□□□ 0.48
TRAV1-2A0A0B4J238 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TRAV1-2A0A0B4J238 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRAV1-2A0A0B4J238 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TRAV1-2A0A0B4J238 AL138724.1-201ENST00000606771 1088 ntBASIC18.02■□□□□ 0.48
TRAV1-2A0A0B4J238 BX005040.4-201ENST00000637145 1518 ntBASIC18.02■□□□□ 0.47
TRAV1-2A0A0B4J238 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV1-2A0A0B4J238 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV1-2A0A0B4J238 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
TRAV1-2A0A0B4J238 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV1-2A0A0B4J238 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
TRAV1-2A0A0B4J238 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV1-2A0A0B4J238 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC18.01■□□□□ 0.47
TRAV1-2A0A0B4J238 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV1-2A0A0B4J238 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV1-2A0A0B4J238 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV1-2A0A0B4J238 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV1-2A0A0B4J238 SRD5A1P1-201ENST00000442297 786 ntBASIC18.01■□□□□ 0.47
TRAV1-2A0A0B4J238 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV1-2A0A0B4J238 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV1-2A0A0B4J238 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV1-2A0A0B4J238 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV1-2A0A0B4J238 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV1-2A0A0B4J238 TCF3P1-201ENST00000423021 1937 ntBASIC18.01■□□□□ 0.47
TRAV1-2A0A0B4J238 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
TRAV1-2A0A0B4J238 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
TRAV1-2A0A0B4J238 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.01■□□□□ 0.47
TRAV1-2A0A0B4J238 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TRAV1-2A0A0B4J238 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRAV1-2A0A0B4J238 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRAV1-2A0A0B4J238 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRAV1-2A0A0B4J238 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
TRAV1-2A0A0B4J238 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC18■□□□□ 0.47
TRAV1-2A0A0B4J238 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
TRAV1-2A0A0B4J238 AL356740.2-201ENST00000601559 647 ntBASIC18■□□□□ 0.47
TRAV1-2A0A0B4J238 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC18■□□□□ 0.47
TRAV1-2A0A0B4J238 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRAV1-2A0A0B4J238 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18■□□□□ 0.47
TRAV1-2A0A0B4J238 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRAV1-2A0A0B4J238 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRAV1-2A0A0B4J238 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRAV1-2A0A0B4J238 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
TRAV1-2A0A0B4J238 AC018445.3-201ENST00000624177 1945 ntBASIC18■□□□□ 0.47
TRAV1-2A0A0B4J238 EXOC3-AS1-202ENST00000623673 1663 ntBASIC17.99■□□□□ 0.47
TRAV1-2A0A0B4J238 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TRAV1-2A0A0B4J238 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC17.99■□□□□ 0.47
TRAV1-2A0A0B4J238 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
TRAV1-2A0A0B4J238 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
TRAV1-2A0A0B4J238 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
TRAV1-2A0A0B4J238 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAV1-2A0A0B4J238 CREM-229ENST00000474362 1030 ntTSL 2 BASIC17.99■□□□□ 0.47
TRAV1-2A0A0B4J238 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC17.99■□□□□ 0.47
TRAV1-2A0A0B4J238 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC17.99■□□□□ 0.47
TRAV1-2A0A0B4J238 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC17.99■□□□□ 0.47
TRAV1-2A0A0B4J238 SMUG1P1-201ENST00000590640 811 ntBASIC17.99■□□□□ 0.47
TRAV1-2A0A0B4J238 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC17.99■□□□□ 0.47
TRAV1-2A0A0B4J238 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC17.99■□□□□ 0.47
TRAV1-2A0A0B4J238 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TRAV1-2A0A0B4J238 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAV1-2A0A0B4J238 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TRAV1-2A0A0B4J238 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRAV1-2A0A0B4J238 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV1-2A0A0B4J238 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV1-2A0A0B4J238 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV1-2A0A0B4J238 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV1-2A0A0B4J238 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV1-2A0A0B4J238 AC087289.5-201ENST00000586076 3175 ntBASIC17.98■□□□□ 0.47
TRAV1-2A0A0B4J238 PTCHD3P2-201ENST00000424937 1205 ntBASIC17.98■□□□□ 0.47
TRAV1-2A0A0B4J238 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV1-2A0A0B4J238 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV1-2A0A0B4J238 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
TRAV1-2A0A0B4J238 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms