Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LHX3Q9UBR4 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LHX3Q9UBR4 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
LHX3Q9UBR4 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
LHX3Q9UBR4 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
LHX3Q9UBR4 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC21.03■□□□□ 0.96
LHX3Q9UBR4 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
LHX3Q9UBR4 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
LHX3Q9UBR4 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC21.03■□□□□ 0.96
LHX3Q9UBR4 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LHX3Q9UBR4 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC21.03■□□□□ 0.96
LHX3Q9UBR4 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LHX3Q9UBR4 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
LHX3Q9UBR4 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
LHX3Q9UBR4 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC21.03■□□□□ 0.96
LHX3Q9UBR4 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
LHX3Q9UBR4 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
LHX3Q9UBR4 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
LHX3Q9UBR4 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LHX3Q9UBR4 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC21.03■□□□□ 0.96
LHX3Q9UBR4 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC21.03■□□□□ 0.96
LHX3Q9UBR4 AL049796.1-201ENST00000565336 1766 ntBASIC21.02■□□□□ 0.96
LHX3Q9UBR4 EXOC3-AS1-202ENST00000623673 1663 ntBASIC21.02■□□□□ 0.96
LHX3Q9UBR4 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
LHX3Q9UBR4 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
LHX3Q9UBR4 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC21.02■□□□□ 0.96
LHX3Q9UBR4 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC21.02■□□□□ 0.96
LHX3Q9UBR4 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC21.02■□□□□ 0.96
LHX3Q9UBR4 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC21.02■□□□□ 0.96
LHX3Q9UBR4 MAP2K4P1-201ENST00000438453 1195 ntBASIC21.02■□□□□ 0.96
LHX3Q9UBR4 AL162412.1-201ENST00000567129 965 ntBASIC21.02■□□□□ 0.96
LHX3Q9UBR4 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
LHX3Q9UBR4 GXYLT1P5-201ENST00000614548 1189 ntBASIC21.02■□□□□ 0.96
LHX3Q9UBR4 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC21.02■□□□□ 0.96
LHX3Q9UBR4 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC21.02■□□□□ 0.96
LHX3Q9UBR4 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC21.02■□□□□ 0.96
LHX3Q9UBR4 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC21.02■□□□□ 0.95
LHX3Q9UBR4 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.02■□□□□ 0.95
LHX3Q9UBR4 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
LHX3Q9UBR4 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC21.02■□□□□ 0.95
LHX3Q9UBR4 AF106564.1-201ENST00000607058 2553 ntBASIC21.01■□□□□ 0.95
LHX3Q9UBR4 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC21.01■□□□□ 0.95
LHX3Q9UBR4 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LHX3Q9UBR4 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
LHX3Q9UBR4 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
LHX3Q9UBR4 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
LHX3Q9UBR4 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC21.01■□□□□ 0.95
LHX3Q9UBR4 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
LHX3Q9UBR4 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC21.01■□□□□ 0.95
LHX3Q9UBR4 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC21.01■□□□□ 0.95
LHX3Q9UBR4 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC21.01■□□□□ 0.95
LHX3Q9UBR4 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LHX3Q9UBR4 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LHX3Q9UBR4 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
LHX3Q9UBR4 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
LHX3Q9UBR4 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LHX3Q9UBR4 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
LHX3Q9UBR4 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
LHX3Q9UBR4 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
LHX3Q9UBR4 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC21■□□□□ 0.95
LHX3Q9UBR4 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC21■□□□□ 0.95
LHX3Q9UBR4 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LHX3Q9UBR4 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LHX3Q9UBR4 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
LHX3Q9UBR4 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC21■□□□□ 0.95
LHX3Q9UBR4 NCF1B-203ENST00000435988 1254 ntBASIC21■□□□□ 0.95
LHX3Q9UBR4 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC21■□□□□ 0.95
LHX3Q9UBR4 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
LHX3Q9UBR4 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21■□□□□ 0.95
LHX3Q9UBR4 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
LHX3Q9UBR4 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LHX3Q9UBR4 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC21■□□□□ 0.95
LHX3Q9UBR4 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LHX3Q9UBR4 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LHX3Q9UBR4 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.99■□□□□ 0.95
LHX3Q9UBR4 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
LHX3Q9UBR4 BET1L-204ENST00000410108 637 ntTSL 3 BASIC20.99■□□□□ 0.95
LHX3Q9UBR4 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC20.99■□□□□ 0.95
LHX3Q9UBR4 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.99■□□□□ 0.95
LHX3Q9UBR4 AC133552.2-202ENST00000575694 574 ntBASIC20.99■□□□□ 0.95
LHX3Q9UBR4 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
LHX3Q9UBR4 WT1-AS_3.1-201ENST00000613262 234 ntBASIC20.99■□□□□ 0.95
LHX3Q9UBR4 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LHX3Q9UBR4 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LHX3Q9UBR4 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LHX3Q9UBR4 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.98■□□□□ 0.95
LHX3Q9UBR4 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
LHX3Q9UBR4 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
LHX3Q9UBR4 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LHX3Q9UBR4 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LHX3Q9UBR4 METTL15-202ENST00000403099 795 ntTSL 5 BASIC20.98■□□□□ 0.95
LHX3Q9UBR4 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
LHX3Q9UBR4 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
LHX3Q9UBR4 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC20.98■□□□□ 0.95
LHX3Q9UBR4 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.98■□□□□ 0.95
LHX3Q9UBR4 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.98■□□□□ 0.95
LHX3Q9UBR4 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LHX3Q9UBR4 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LHX3Q9UBR4 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LHX3Q9UBR4 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms