Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM39Q9HCM9 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM39Q9HCM9 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC20.62■□□□□ 0.89
TRIM39Q9HCM9 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC20.62■□□□□ 0.89
TRIM39Q9HCM9 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.62■□□□□ 0.89
TRIM39Q9HCM9 AC245052.3-201ENST00000450182 901 ntBASIC20.62■□□□□ 0.89
TRIM39Q9HCM9 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM39Q9HCM9 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC20.62■□□□□ 0.89
TRIM39Q9HCM9 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM39Q9HCM9 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC20.62■□□□□ 0.89
TRIM39Q9HCM9 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC20.62■□□□□ 0.89
TRIM39Q9HCM9 MAZ-216ENST00000616501 991 ntTSL 5 BASIC20.62■□□□□ 0.89
TRIM39Q9HCM9 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM39Q9HCM9 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM39Q9HCM9 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM39Q9HCM9 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.61■□□□□ 0.89
TRIM39Q9HCM9 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
TRIM39Q9HCM9 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM39Q9HCM9 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM39Q9HCM9 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM39Q9HCM9 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC20.61■□□□□ 0.89
TRIM39Q9HCM9 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.61■□□□□ 0.89
TRIM39Q9HCM9 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM39Q9HCM9 AC007322.4-201ENST00000509611 723 ntBASIC20.61■□□□□ 0.89
TRIM39Q9HCM9 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC20.61■□□□□ 0.89
TRIM39Q9HCM9 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
TRIM39Q9HCM9 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM39Q9HCM9 Z98882.1-201ENST00000622160 2253 ntBASIC20.61■□□□□ 0.89
TRIM39Q9HCM9 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.61■□□□□ 0.89
TRIM39Q9HCM9 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.61■□□□□ 0.89
TRIM39Q9HCM9 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
TRIM39Q9HCM9 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM39Q9HCM9 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM39Q9HCM9 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM39Q9HCM9 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM39Q9HCM9 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM39Q9HCM9 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.6■□□□□ 0.89
TRIM39Q9HCM9 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
TRIM39Q9HCM9 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM39Q9HCM9 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM39Q9HCM9 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC20.6■□□□□ 0.89
TRIM39Q9HCM9 CROCCP5-201ENST00000436658 830 ntBASIC20.6■□□□□ 0.89
TRIM39Q9HCM9 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM39Q9HCM9 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM39Q9HCM9 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC20.6■□□□□ 0.89
TRIM39Q9HCM9 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM39Q9HCM9 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM39Q9HCM9 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM39Q9HCM9 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM39Q9HCM9 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM39Q9HCM9 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20.59■□□□□ 0.89
TRIM39Q9HCM9 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM39Q9HCM9 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM39Q9HCM9 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM39Q9HCM9 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.59■□□□□ 0.89
TRIM39Q9HCM9 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM39Q9HCM9 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM39Q9HCM9 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM39Q9HCM9 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.58■□□□□ 0.89
TRIM39Q9HCM9 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM39Q9HCM9 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM39Q9HCM9 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.58■□□□□ 0.89
TRIM39Q9HCM9 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
TRIM39Q9HCM9 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.58■□□□□ 0.89
TRIM39Q9HCM9 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
TRIM39Q9HCM9 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.58■□□□□ 0.89
TRIM39Q9HCM9 AC005181.1-201ENST00000604782 1256 ntBASIC20.58■□□□□ 0.89
TRIM39Q9HCM9 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM39Q9HCM9 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
TRIM39Q9HCM9 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
TRIM39Q9HCM9 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
TRIM39Q9HCM9 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
TRIM39Q9HCM9 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.88
TRIM39Q9HCM9 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.57■□□□□ 0.88
TRIM39Q9HCM9 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC20.57■□□□□ 0.88
TRIM39Q9HCM9 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM39Q9HCM9 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
TRIM39Q9HCM9 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
TRIM39Q9HCM9 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM39Q9HCM9 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM39Q9HCM9 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
TRIM39Q9HCM9 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC20.57■□□□□ 0.88
TRIM39Q9HCM9 PPP1R14BP3-201ENST00000509033 445 ntBASIC20.57■□□□□ 0.88
TRIM39Q9HCM9 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.57■□□□□ 0.88
TRIM39Q9HCM9 AC068338.2-201ENST00000563278 1430 ntBASIC20.57■□□□□ 0.88
TRIM39Q9HCM9 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC20.57■□□□□ 0.88
TRIM39Q9HCM9 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM39Q9HCM9 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM39Q9HCM9 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC20.56■□□□□ 0.88
TRIM39Q9HCM9 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
TRIM39Q9HCM9 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM39Q9HCM9 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM39Q9HCM9 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
TRIM39Q9HCM9 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM39Q9HCM9 AC006970.2-201ENST00000450065 779 ntBASIC20.56■□□□□ 0.88
TRIM39Q9HCM9 TK2-208ENST00000545043 1120 ntTSL 2 BASIC20.56■□□□□ 0.88
TRIM39Q9HCM9 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM39Q9HCM9 AL591742.1-201ENST00000604433 565 ntBASIC20.56■□□□□ 0.88
TRIM39Q9HCM9 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM39Q9HCM9 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms