Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC18.26■□□□□ 0.51
MMP28Q9H239 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC18.26■□□□□ 0.51
MMP28Q9H239 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
MMP28Q9H239 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.26■□□□□ 0.51
MMP28Q9H239 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MMP28Q9H239 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
MMP28Q9H239 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MMP28Q9H239 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.25■□□□□ 0.51
MMP28Q9H239 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MMP28Q9H239 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MMP28Q9H239 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
MMP28Q9H239 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
MMP28Q9H239 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
MMP28Q9H239 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MMP28Q9H239 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
MMP28Q9H239 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
MMP28Q9H239 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
MMP28Q9H239 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MMP28Q9H239 MIR935-201ENST00000401179 91 ntBASIC18.25■□□□□ 0.51
MMP28Q9H239 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
MMP28Q9H239 CA15P2-201ENST00000611168 834 ntBASIC18.25■□□□□ 0.51
MMP28Q9H239 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
MMP28Q9H239 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MMP28Q9H239 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
MMP28Q9H239 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
MMP28Q9H239 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
MMP28Q9H239 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
MMP28Q9H239 C17orf82-201ENST00000623772 1530 ntBASIC18.24■□□□□ 0.51
MMP28Q9H239 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
MMP28Q9H239 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
MMP28Q9H239 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
MMP28Q9H239 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
MMP28Q9H239 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC18.24■□□□□ 0.51
MMP28Q9H239 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC18.24■□□□□ 0.51
MMP28Q9H239 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.24■□□□□ 0.51
MMP28Q9H239 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MMP28Q9H239 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MMP28Q9H239 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC18.24■□□□□ 0.51
MMP28Q9H239 BX323043.1-201ENST00000641006 1765 ntBASIC18.24■□□□□ 0.51
MMP28Q9H239 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MMP28Q9H239 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
MMP28Q9H239 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MMP28Q9H239 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.24■□□□□ 0.51
MMP28Q9H239 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.24■□□□□ 0.51
MMP28Q9H239 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC18.23■□□□□ 0.51
MMP28Q9H239 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
MMP28Q9H239 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.23■□□□□ 0.51
MMP28Q9H239 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
MMP28Q9H239 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
MMP28Q9H239 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.23■□□□□ 0.51
MMP28Q9H239 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
MMP28Q9H239 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.23■□□□□ 0.51
MMP28Q9H239 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
MMP28Q9H239 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC18.23■□□□□ 0.51
MMP28Q9H239 FP325331.1-202ENST00000623531 1380 ntBASIC18.23■□□□□ 0.51
MMP28Q9H239 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
MMP28Q9H239 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
MMP28Q9H239 RPP21-222ENST00000433076 577 ntTSL 2 BASIC18.23■□□□□ 0.51
MMP28Q9H239 AC131281.2-201ENST00000520478 145 ntBASIC18.23■□□□□ 0.51
MMP28Q9H239 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
MMP28Q9H239 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
MMP28Q9H239 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
MMP28Q9H239 NKILA-201ENST00000613231 537 ntTSL 4 BASIC18.23■□□□□ 0.51
MMP28Q9H239 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
MMP28Q9H239 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
MMP28Q9H239 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
MMP28Q9H239 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
MMP28Q9H239 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
MMP28Q9H239 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
MMP28Q9H239 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
MMP28Q9H239 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
MMP28Q9H239 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
MMP28Q9H239 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
MMP28Q9H239 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
MMP28Q9H239 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MMP28Q9H239 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MMP28Q9H239 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
MMP28Q9H239 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
MMP28Q9H239 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
MMP28Q9H239 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.22■□□□□ 0.51
MMP28Q9H239 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MMP28Q9H239 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC18.22■□□□□ 0.51
MMP28Q9H239 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC18.22■□□□□ 0.51
MMP28Q9H239 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MMP28Q9H239 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MMP28Q9H239 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MMP28Q9H239 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
MMP28Q9H239 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
MMP28Q9H239 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
MMP28Q9H239 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MMP28Q9H239 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.22■□□□□ 0.51
MMP28Q9H239 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MMP28Q9H239 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.22■□□□□ 0.51
MMP28Q9H239 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MMP28Q9H239 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MMP28Q9H239 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
MMP28Q9H239 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
MMP28Q9H239 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
MMP28Q9H239 LINC01529-204ENST00000636474 1715 ntBASIC18.21■□□□□ 0.51
MMP28Q9H239 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms