Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC22.29■■□□□ 1.16
PAAF1Q9BRP4 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
PAAF1Q9BRP4 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
PAAF1Q9BRP4 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
PAAF1Q9BRP4 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC22.29■■□□□ 1.16
PAAF1Q9BRP4 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
PAAF1Q9BRP4 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC22.28■■□□□ 1.16
PAAF1Q9BRP4 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PAAF1Q9BRP4 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
PAAF1Q9BRP4 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC22.28■■□□□ 1.16
PAAF1Q9BRP4 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
PAAF1Q9BRP4 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PAAF1Q9BRP4 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PAAF1Q9BRP4 LSM12P1-201ENST00000411836 588 ntBASIC22.28■■□□□ 1.16
PAAF1Q9BRP4 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC22.28■■□□□ 1.16
PAAF1Q9BRP4 POU5F1P3-201ENST00000428824 1078 ntBASIC22.28■■□□□ 1.16
PAAF1Q9BRP4 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
PAAF1Q9BRP4 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC22.28■■□□□ 1.16
PAAF1Q9BRP4 FAM201B-201ENST00000458407 597 ntBASIC22.28■■□□□ 1.16
PAAF1Q9BRP4 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC22.28■■□□□ 1.16
PAAF1Q9BRP4 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC22.28■■□□□ 1.16
PAAF1Q9BRP4 CYP2T3P-201ENST00000601990 817 ntBASIC22.28■■□□□ 1.16
PAAF1Q9BRP4 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PAAF1Q9BRP4 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
PAAF1Q9BRP4 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
PAAF1Q9BRP4 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PAAF1Q9BRP4 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PAAF1Q9BRP4 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
PAAF1Q9BRP4 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PAAF1Q9BRP4 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PAAF1Q9BRP4 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PAAF1Q9BRP4 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC22.27■■□□□ 1.16
PAAF1Q9BRP4 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC22.27■■□□□ 1.16
PAAF1Q9BRP4 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC22.27■■□□□ 1.16
PAAF1Q9BRP4 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC22.27■■□□□ 1.16
PAAF1Q9BRP4 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PAAF1Q9BRP4 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PAAF1Q9BRP4 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
PAAF1Q9BRP4 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PAAF1Q9BRP4 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
PAAF1Q9BRP4 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC22.26■■□□□ 1.15
PAAF1Q9BRP4 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC22.26■■□□□ 1.15
PAAF1Q9BRP4 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC22.26■■□□□ 1.15
PAAF1Q9BRP4 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC22.26■■□□□ 1.15
PAAF1Q9BRP4 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
PAAF1Q9BRP4 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC22.26■■□□□ 1.15
PAAF1Q9BRP4 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC22.26■■□□□ 1.15
PAAF1Q9BRP4 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PAAF1Q9BRP4 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC22.26■■□□□ 1.15
PAAF1Q9BRP4 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC22.26■■□□□ 1.15
PAAF1Q9BRP4 AL117328.2-201ENST00000624617 1940 ntBASIC22.25■■□□□ 1.15
PAAF1Q9BRP4 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
PAAF1Q9BRP4 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
PAAF1Q9BRP4 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
PAAF1Q9BRP4 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PAAF1Q9BRP4 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
PAAF1Q9BRP4 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
PAAF1Q9BRP4 SERPINH1P1-201ENST00000419794 1249 ntBASIC22.25■■□□□ 1.15
PAAF1Q9BRP4 AC007322.3-201ENST00000426526 701 ntBASIC22.25■■□□□ 1.15
PAAF1Q9BRP4 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC22.25■■□□□ 1.15
PAAF1Q9BRP4 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC22.25■■□□□ 1.15
PAAF1Q9BRP4 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
PAAF1Q9BRP4 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PAAF1Q9BRP4 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PAAF1Q9BRP4 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
PAAF1Q9BRP4 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PAAF1Q9BRP4 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
PAAF1Q9BRP4 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PAAF1Q9BRP4 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PAAF1Q9BRP4 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PAAF1Q9BRP4 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC22.24■■□□□ 1.15
PAAF1Q9BRP4 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC22.24■■□□□ 1.15
PAAF1Q9BRP4 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC22.24■■□□□ 1.15
PAAF1Q9BRP4 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC22.24■■□□□ 1.15
PAAF1Q9BRP4 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC22.24■■□□□ 1.15
PAAF1Q9BRP4 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC22.24■■□□□ 1.15
PAAF1Q9BRP4 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
PAAF1Q9BRP4 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC22.24■■□□□ 1.15
PAAF1Q9BRP4 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC22.24■■□□□ 1.15
PAAF1Q9BRP4 AC100791.3-201ENST00000617619 330 ntBASIC22.24■■□□□ 1.15
PAAF1Q9BRP4 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
PAAF1Q9BRP4 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC22.24■■□□□ 1.15
PAAF1Q9BRP4 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
PAAF1Q9BRP4 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
PAAF1Q9BRP4 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
PAAF1Q9BRP4 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PAAF1Q9BRP4 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC22.24■■□□□ 1.15
PAAF1Q9BRP4 PALM-207ENST00000590161 2137 ntTSL 4 BASIC22.24■■□□□ 1.15
PAAF1Q9BRP4 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC22.23■■□□□ 1.15
PAAF1Q9BRP4 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC22.23■■□□□ 1.15
PAAF1Q9BRP4 SAPCD2P1-201ENST00000395413 1184 ntBASIC22.23■■□□□ 1.15
PAAF1Q9BRP4 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC22.23■■□□□ 1.15
PAAF1Q9BRP4 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC22.23■■□□□ 1.15
PAAF1Q9BRP4 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC22.23■■□□□ 1.15
PAAF1Q9BRP4 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC22.23■■□□□ 1.15
PAAF1Q9BRP4 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PAAF1Q9BRP4 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PAAF1Q9BRP4 MCRIP2P1-201ENST00000394346 511 ntBASIC22.22■■□□□ 1.15
PAAF1Q9BRP4 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
PAAF1Q9BRP4 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms