Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL12A1Q99715 CD44-222ENST00000526025 1052 ntTSL 2 BASIC18.38■□□□□ 0.53
COL12A1Q99715 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
COL12A1Q99715 LTBR-211ENST00000543190 785 ntTSL 3 BASIC18.38■□□□□ 0.53
COL12A1Q99715 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC18.38■□□□□ 0.53
COL12A1Q99715 AC053503.5-201ENST00000601508 636 ntBASIC18.38■□□□□ 0.53
COL12A1Q99715 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL12A1Q99715 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
COL12A1Q99715 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.38■□□□□ 0.53
COL12A1Q99715 EED-207ENST00000528180 1745 ntTSL 5 BASIC18.38■□□□□ 0.53
COL12A1Q99715 AL139125.2-201ENST00000623134 1869 ntBASIC18.38■□□□□ 0.53
COL12A1Q99715 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL12A1Q99715 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL12A1Q99715 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL12A1Q99715 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.38■□□□□ 0.53
COL12A1Q99715 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.38■□□□□ 0.53
COL12A1Q99715 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL12A1Q99715 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
COL12A1Q99715 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL12A1Q99715 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.37■□□□□ 0.53
COL12A1Q99715 DUX4L26-201ENST00000489078 1255 ntBASIC18.37■□□□□ 0.53
COL12A1Q99715 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL12A1Q99715 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC18.37■□□□□ 0.53
COL12A1Q99715 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL12A1Q99715 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL12A1Q99715 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
COL12A1Q99715 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL12A1Q99715 AL589743.5-201ENST00000616611 1050 ntBASIC18.37■□□□□ 0.53
COL12A1Q99715 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC18.37■□□□□ 0.53
COL12A1Q99715 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
COL12A1Q99715 GCK-205ENST00000437084 1385 ntTSL 5 BASIC18.37■□□□□ 0.53
COL12A1Q99715 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL12A1Q99715 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC18.37■□□□□ 0.53
COL12A1Q99715 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL12A1Q99715 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC18.36■□□□□ 0.53
COL12A1Q99715 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC18.36■□□□□ 0.53
COL12A1Q99715 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC18.36■□□□□ 0.53
COL12A1Q99715 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
COL12A1Q99715 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL12A1Q99715 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
COL12A1Q99715 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL12A1Q99715 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
COL12A1Q99715 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL12A1Q99715 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL12A1Q99715 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL12A1Q99715 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL12A1Q99715 AC009947.2-201ENST00000444014 672 ntBASIC18.36■□□□□ 0.53
COL12A1Q99715 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL12A1Q99715 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC18.36■□□□□ 0.53
COL12A1Q99715 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
COL12A1Q99715 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC18.36■□□□□ 0.53
COL12A1Q99715 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL12A1Q99715 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL12A1Q99715 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL12A1Q99715 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL12A1Q99715 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL12A1Q99715 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL12A1Q99715 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.36■□□□□ 0.53
COL12A1Q99715 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL12A1Q99715 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL12A1Q99715 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL12A1Q99715 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC18.36■□□□□ 0.53
COL12A1Q99715 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC18.36■□□□□ 0.53
COL12A1Q99715 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC18.36■□□□□ 0.53
COL12A1Q99715 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
COL12A1Q99715 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL12A1Q99715 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL12A1Q99715 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC18.35■□□□□ 0.53
COL12A1Q99715 ISCU-203ENST00000431221 799 ntTSL 2 BASIC18.35■□□□□ 0.53
COL12A1Q99715 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
COL12A1Q99715 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC18.35■□□□□ 0.53
COL12A1Q99715 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.35■□□□□ 0.53
COL12A1Q99715 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL12A1Q99715 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL12A1Q99715 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC18.35■□□□□ 0.53
COL12A1Q99715 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
COL12A1Q99715 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC18.35■□□□□ 0.53
COL12A1Q99715 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL12A1Q99715 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC18.35■□□□□ 0.53
COL12A1Q99715 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
COL12A1Q99715 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.35■□□□□ 0.53
COL12A1Q99715 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL12A1Q99715 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.35■□□□□ 0.53
COL12A1Q99715 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.35■□□□□ 0.53
COL12A1Q99715 AC113410.3-201ENST00000623366 203 ntBASIC18.35■□□□□ 0.53
COL12A1Q99715 AL358472.4-201ENST00000633140 710 ntBASIC18.35■□□□□ 0.53
COL12A1Q99715 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL12A1Q99715 LINC00526-201ENST00000581067 1875 ntBASIC18.35■□□□□ 0.53
COL12A1Q99715 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL12A1Q99715 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.34■□□□□ 0.53
COL12A1Q99715 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC18.34■□□□□ 0.53
COL12A1Q99715 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL12A1Q99715 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC18.34■□□□□ 0.53
COL12A1Q99715 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC18.34■□□□□ 0.53
COL12A1Q99715 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL12A1Q99715 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC18.34■□□□□ 0.53
COL12A1Q99715 WWOX-216ENST00000569818 525 ntBASIC18.34■□□□□ 0.53
COL12A1Q99715 AC005363.2-201ENST00000618631 242 ntBASIC18.34■□□□□ 0.53
COL12A1Q99715 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.34■□□□□ 0.53
COL12A1Q99715 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms