Protein–RNA interactions for Protein: Q99569

PKP4, Plakophilin-4, humanhuman

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4Q99569 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
PKP4Q99569 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PKP4Q99569 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PKP4Q99569 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
PKP4Q99569 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.23■□□□□ 0.83
PKP4Q99569 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
PKP4Q99569 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PKP4Q99569 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PKP4Q99569 ME3-201ENST00000323418 1068 ntTSL 5 BASIC20.23■□□□□ 0.83
PKP4Q99569 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PKP4Q99569 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC20.23■□□□□ 0.83
PKP4Q99569 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PKP4Q99569 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
PKP4Q99569 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PKP4Q99569 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PKP4Q99569 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC20.23■□□□□ 0.83
PKP4Q99569 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PKP4Q99569 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.23■□□□□ 0.83
PKP4Q99569 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PKP4Q99569 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
PKP4Q99569 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PKP4Q99569 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.23■□□□□ 0.83
PKP4Q99569 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
PKP4Q99569 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
PKP4Q99569 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC20.22■□□□□ 0.83
PKP4Q99569 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PKP4Q99569 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
PKP4Q99569 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
PKP4Q99569 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PKP4Q99569 AC016769.1-201ENST00000409132 1010 ntBASIC20.22■□□□□ 0.83
PKP4Q99569 AC245052.3-201ENST00000450182 901 ntBASIC20.22■□□□□ 0.83
PKP4Q99569 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.22■□□□□ 0.83
PKP4Q99569 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PKP4Q99569 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.22■□□□□ 0.83
PKP4Q99569 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PKP4Q99569 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PKP4Q99569 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.21■□□□□ 0.83
PKP4Q99569 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
PKP4Q99569 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PKP4Q99569 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.21■□□□□ 0.83
PKP4Q99569 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PKP4Q99569 AC006015.1-201ENST00000429970 570 ntBASIC20.21■□□□□ 0.83
PKP4Q99569 KRT18P11-201ENST00000435214 1283 ntBASIC20.21■□□□□ 0.83
PKP4Q99569 PARL-206ENST00000435888 1098 ntTSL 5 BASIC20.21■□□□□ 0.83
PKP4Q99569 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
PKP4Q99569 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PKP4Q99569 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.21■□□□□ 0.83
PKP4Q99569 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.21■□□□□ 0.83
PKP4Q99569 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PKP4Q99569 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PKP4Q99569 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
PKP4Q99569 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
PKP4Q99569 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.2■□□□□ 0.83
PKP4Q99569 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PKP4Q99569 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC20.2■□□□□ 0.82
PKP4Q99569 BRI3-207ENST00000539286 699 ntTSL 2 BASIC20.2■□□□□ 0.82
PKP4Q99569 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PKP4Q99569 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC20.2■□□□□ 0.82
PKP4Q99569 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PKP4Q99569 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PKP4Q99569 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.2■□□□□ 0.82
PKP4Q99569 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PKP4Q99569 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.19■□□□□ 0.82
PKP4Q99569 RBM17P2-201ENST00000616397 1405 ntBASIC20.19■□□□□ 0.82
PKP4Q99569 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.19■□□□□ 0.82
PKP4Q99569 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PKP4Q99569 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.19■□□□□ 0.82
PKP4Q99569 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.19■□□□□ 0.82
PKP4Q99569 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.19■□□□□ 0.82
PKP4Q99569 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
PKP4Q99569 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PKP4Q99569 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PKP4Q99569 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PKP4Q99569 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.18■□□□□ 0.82
PKP4Q99569 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PKP4Q99569 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
PKP4Q99569 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PKP4Q99569 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PKP4Q99569 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
PKP4Q99569 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PKP4Q99569 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PKP4Q99569 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PKP4Q99569 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PKP4Q99569 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
PKP4Q99569 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
PKP4Q99569 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PKP4Q99569 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
PKP4Q99569 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC20.18■□□□□ 0.82
PKP4Q99569 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.18■□□□□ 0.82
PKP4Q99569 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.18■□□□□ 0.82
PKP4Q99569 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PKP4Q99569 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.18■□□□□ 0.82
PKP4Q99569 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.18■□□□□ 0.82
PKP4Q99569 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PKP4Q99569 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
PKP4Q99569 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
PKP4Q99569 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC20.17■□□□□ 0.82
PKP4Q99569 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PKP4Q99569 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PKP4Q99569 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms