Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC35.03■■■■□ 3.2
IFT140Q96RY7 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC35.03■■■■□ 3.2
IFT140Q96RY7 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC35.03■■■■□ 3.2
IFT140Q96RY7 GRAP-204ENST00000573099 846 ntTSL 3 BASIC35.03■■■■□ 3.2
IFT140Q96RY7 P4HB-223ENST00000576390 439 ntTSL 4 BASIC35.03■■■■□ 3.2
IFT140Q96RY7 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC35.03■■■■□ 3.2
IFT140Q96RY7 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC35.02■■■■□ 3.2
IFT140Q96RY7 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC35.02■■■■□ 3.2
IFT140Q96RY7 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC35.02■■■■□ 3.2
IFT140Q96RY7 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC35.02■■■■□ 3.2
IFT140Q96RY7 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC35.02■■■■□ 3.2
IFT140Q96RY7 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC35.02■■■■□ 3.2
IFT140Q96RY7 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC35.01■■■■□ 3.2
IFT140Q96RY7 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC35.01■■■■□ 3.2
IFT140Q96RY7 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC35.01■■■■□ 3.2
IFT140Q96RY7 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC35.01■■■■□ 3.19
IFT140Q96RY7 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC35.01■■■■□ 3.19
IFT140Q96RY7 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC35.01■■■■□ 3.19
IFT140Q96RY7 AC007322.3-201ENST00000426526 701 ntBASIC35.01■■■■□ 3.19
IFT140Q96RY7 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC35.01■■■■□ 3.19
IFT140Q96RY7 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC35.01■■■■□ 3.19
IFT140Q96RY7 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC35.01■■■■□ 3.19
IFT140Q96RY7 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC35.01■■■■□ 3.19
IFT140Q96RY7 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC35.01■■■■□ 3.19
IFT140Q96RY7 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
IFT140Q96RY7 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC35■■■■□ 3.19
IFT140Q96RY7 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
IFT140Q96RY7 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC35■■■■□ 3.19
IFT140Q96RY7 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC35■■■■□ 3.19
IFT140Q96RY7 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC35■■■■□ 3.19
IFT140Q96RY7 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC35■■■■□ 3.19
IFT140Q96RY7 AC026471.5-201ENST00000615068 467 ntBASIC35■■■■□ 3.19
IFT140Q96RY7 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC35■■■■□ 3.19
IFT140Q96RY7 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
IFT140Q96RY7 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC35■■■■□ 3.19
IFT140Q96RY7 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC34.99■■■■□ 3.19
IFT140Q96RY7 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC34.99■■■■□ 3.19
IFT140Q96RY7 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC34.99■■■■□ 3.19
IFT140Q96RY7 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC34.99■■■■□ 3.19
IFT140Q96RY7 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC34.99■■■■□ 3.19
IFT140Q96RY7 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC34.99■■■■□ 3.19
IFT140Q96RY7 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC34.99■■■■□ 3.19
IFT140Q96RY7 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC34.99■■■■□ 3.19
IFT140Q96RY7 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC34.99■■■■□ 3.19
IFT140Q96RY7 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC34.99■■■■□ 3.19
IFT140Q96RY7 AC137767.1-201ENST00000602918 1920 ntBASIC34.99■■■■□ 3.19
IFT140Q96RY7 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC34.99■■■■□ 3.19
IFT140Q96RY7 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC34.98■■■■□ 3.19
IFT140Q96RY7 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC34.98■■■■□ 3.19
IFT140Q96RY7 THEM4-205ENST00000489410 643 ntTSL 2 BASIC34.98■■■■□ 3.19
IFT140Q96RY7 AC145285.6-201ENST00000604632 637 ntBASIC34.98■■■■□ 3.19
IFT140Q96RY7 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC34.98■■■■□ 3.19
IFT140Q96RY7 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
IFT140Q96RY7 PTPA-214ENST00000423100 988 ntTSL 2 BASIC34.97■■■■□ 3.19
IFT140Q96RY7 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC34.97■■■■□ 3.19
IFT140Q96RY7 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC34.97■■■■□ 3.19
IFT140Q96RY7 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC34.97■■■■□ 3.19
IFT140Q96RY7 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC34.97■■■■□ 3.19
IFT140Q96RY7 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC34.97■■■■□ 3.19
IFT140Q96RY7 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
IFT140Q96RY7 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC34.97■■■■□ 3.19
IFT140Q96RY7 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC34.97■■■■□ 3.19
IFT140Q96RY7 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC34.97■■■■□ 3.19
IFT140Q96RY7 WDR88-203ENST00000592765 651 ntTSL 5 BASIC34.97■■■■□ 3.19
IFT140Q96RY7 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC34.97■■■■□ 3.19
IFT140Q96RY7 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
IFT140Q96RY7 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC34.97■■■■□ 3.19
IFT140Q96RY7 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC34.96■■■■□ 3.19
IFT140Q96RY7 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC34.96■■■■□ 3.19
IFT140Q96RY7 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC34.96■■■■□ 3.19
IFT140Q96RY7 GGT1-206ENST00000404223 952 ntTSL 2 BASIC34.96■■■■□ 3.19
IFT140Q96RY7 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC34.96■■■■□ 3.19
IFT140Q96RY7 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC34.96■■■■□ 3.19
IFT140Q96RY7 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC34.96■■■■□ 3.19
IFT140Q96RY7 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC34.96■■■■□ 3.19
IFT140Q96RY7 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC34.96■■■■□ 3.19
IFT140Q96RY7 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC34.96■■■■□ 3.19
IFT140Q96RY7 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC34.96■■■■□ 3.19
IFT140Q96RY7 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC34.95■■■■□ 3.19
IFT140Q96RY7 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC34.95■■■■□ 3.19
IFT140Q96RY7 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC34.95■■■■□ 3.19
IFT140Q96RY7 CABP2-204ENST00000636477 941 ntTSL 5 BASIC34.95■■■■□ 3.19
IFT140Q96RY7 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC34.95■■■■□ 3.18
IFT140Q96RY7 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC34.94■■■■□ 3.18
IFT140Q96RY7 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC34.94■■■■□ 3.18
IFT140Q96RY7 AP003071.4-201ENST00000562276 1284 ntBASIC34.94■■■■□ 3.18
IFT140Q96RY7 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC34.94■■■■□ 3.18
IFT140Q96RY7 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC34.94■■■■□ 3.18
IFT140Q96RY7 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC34.93■■■■□ 3.18
IFT140Q96RY7 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC34.93■■■■□ 3.18
IFT140Q96RY7 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC34.93■■■■□ 3.18
IFT140Q96RY7 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC34.93■■■■□ 3.18
IFT140Q96RY7 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC34.93■■■■□ 3.18
IFT140Q96RY7 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC34.93■■■■□ 3.18
IFT140Q96RY7 NME3-204ENST00000563498 920 ntTSL 2 BASIC34.93■■■■□ 3.18
IFT140Q96RY7 RMI2-205ENST00000576027 818 ntTSL 2 BASIC34.93■■■■□ 3.18
IFT140Q96RY7 AC120498.8-201ENST00000614275 531 ntBASIC34.93■■■■□ 3.18
IFT140Q96RY7 MIR6786-201ENST00000616843 113 ntBASIC34.93■■■■□ 3.18
IFT140Q96RY7 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC34.93■■■■□ 3.18
IFT140Q96RY7 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC34.93■■■■□ 3.18
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms