Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 WDR74-215ENST00000544831 814 ntTSL 217.01■□□□□ 0.313e-8■■■□□ 15.3
DDX55Q8NHQ9 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC16.81■□□□□ 0.281e-10■■■□□ 15.3
DDX55Q8NHQ9 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.264e-11■■■□□ 15.3
DDX55Q8NHQ9 C1orf159-219ENST00000487177 3315 ntTSL 216.53■□□□□ 0.243e-8■■■□□ 15.3
DDX55Q8NHQ9 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.233e-8■■■□□ 15.3
DDX55Q8NHQ9 MECR-202ENST00000373791 2416 ntTSL 2 BASIC16.5■□□□□ 0.233e-8■■■□□ 15.3
DDX55Q8NHQ9 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.24e-11■■■□□ 15.3
DDX55Q8NHQ9 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.13e-8■■■□□ 15.3
DDX55Q8NHQ9 ZC3H18-204ENST00000564161 4654 ntTSL 215.41■□□□□ 0.063e-8■■■□□ 15.3
DDX55Q8NHQ9 C1orf159-216ENST00000477196 3214 ntTSL 213.92□□□□□ -0.183e-8■■■□□ 15.3
DDX55Q8NHQ9 KLF6-206ENST00000497571 4656 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.193e-8■■■□□ 15.3
DDX55Q8NHQ9 WDR74-214ENST00000543688 537 ntTSL 313.25□□□□□ -0.293e-8■■■□□ 15.3
DDX55Q8NHQ9 CCAR2-206ENST00000520861 3560 ntTSL 1 (best) BASIC12.81□□□□□ -0.364e-11■■■□□ 15.3
DDX55Q8NHQ9 DLST-202ENST00000334220 2838 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.393e-8■■■□□ 15.3
DDX55Q8NHQ9 KLF6-207ENST00000542957 4537 ntTSL 5 BASIC12.52□□□□□ -0.413e-8■■■□□ 15.3
DDX55Q8NHQ9 ANXA6-213ENST00000522664 451 ntTSL 511.69□□□□□ -0.541e-10■■■□□ 15.3
DDX55Q8NHQ9 DLST-201ENST00000238671 1464 ntTSL 211.61□□□□□ -0.553e-8■■■□□ 15.3
DDX55Q8NHQ9 DLST-204ENST00000554612 1479 ntTSL 211.57□□□□□ -0.563e-8■■■□□ 15.3
DDX55Q8NHQ9 IFT20-213ENST00000583796 1485 nt11.48□□□□□ -0.573e-8■■■□□ 15.3
DDX55Q8NHQ9 IFT20-205ENST00000578009 611 ntTSL 35.29□□□□□ -1.563e-8■■■□□ 15.3
DDX55Q8NHQ9 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC17■□□□□ 0.311e-7■■■□□ 15.3
DDX55Q8NHQ9 WDR83OS-203ENST00000598732 627 ntTSL 213.81□□□□□ -0.21e-7■■■□□ 15.3
DDX55Q8NHQ9 WDR83OS-202ENST00000596731 2562 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.211e-7■■■□□ 15.3
DDX55Q8NHQ9 WDR83OS-201ENST00000222190 599 ntAPPRIS ALT1 TSL 2 BASIC13.01□□□□□ -0.331e-7■■■□□ 15.3
DDX55Q8NHQ9 GPX1-201ENST00000419349 1106 ntBASIC30.9■■■□□ 2.547e-12■■■□□ 15.3
DDX55Q8NHQ9 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC25.02■■□□□ 1.67e-12■■■□□ 15.3
DDX55Q8NHQ9 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC24.41■■□□□ 1.57e-12■■■□□ 15.3
DDX55Q8NHQ9 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.267e-8■■■□□ 15.3
DDX55Q8NHQ9 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.187e-8■■■□□ 15.3
DDX55Q8NHQ9 CTSH-217ENST00000534533 836 ntTSL 312.85□□□□□ -0.353e-9■■■□□ 15.3
DDX55Q8NHQ9 GPX3-203ENST00000519214 834 ntTSL 517.59■□□□□ 0.414e-16■■■□□ 15.2
DDX55Q8NHQ9 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC19.04■□□□□ 0.645e-37■■■□□ 15.2
DDX55Q8NHQ9 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.285e-37■■■□□ 15.2
DDX55Q8NHQ9 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC24.34■■□□□ 1.491e-6■■■□□ 15.2
DDX55Q8NHQ9 C20orf204-202ENST00000431158 2954 ntTSL 1 (best)17.47■□□□□ 0.391e-6■■■□□ 15.2
DDX55Q8NHQ9 C20orf204-203ENST00000444463 4303 ntTSL 1 (best)17.14■□□□□ 0.331e-6■■■□□ 15.2
DDX55Q8NHQ9 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC21.4■■□□□ 1.026e-7■■■□□ 15.2
DDX55Q8NHQ9 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.326e-7■■■□□ 15.2
DDX55Q8NHQ9 KHSRP-205ENST00000595223 956 ntTSL 521.81■■□□□ 1.083e-21■■■□□ 15.2
DDX55Q8NHQ9 CTNNB1-212ENST00000471014 607 ntTSL 316.07■□□□□ 0.161e-26■■■□□ 15.2
DDX55Q8NHQ9 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.021e-26■■■□□ 15.2
DDX55Q8NHQ9 CTNNB1-201ENST00000349496 3737 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.281e-26■■■□□ 15.2
DDX55Q8NHQ9 CTNNB1-203ENST00000396185 3356 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.421e-26■■■□□ 15.2
DDX55Q8NHQ9 YWHAH-205ENST00000471374 1735 ntTSL 222.26■■□□□ 1.151e-11■■■□□ 15.2
DDX55Q8NHQ9 CHD8-214ENST00000557727 1146 nt10.82□□□□□ -0.689e-7■■■□□ 15.2
DDX55Q8NHQ9 CHD8-201ENST00000399982 8229 ntAPPRIS ALT2 TSL 1 (best) BASIC9.6□□□□□ -0.879e-7■■■□□ 15.2
DDX55Q8NHQ9 CHD8-213ENST00000557364 8137 ntAPPRIS ALT2 TSL 5 BASIC9.12□□□□□ -0.959e-7■■■□□ 15.2
DDX55Q8NHQ9 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC6.97□□□□□ -1.299e-7■■■□□ 15.2
DDX55Q8NHQ9 PRELID1-207ENST00000510797 712 ntTSL 329.33■■■□□ 2.291e-16■■■□□ 15.2
DDX55Q8NHQ9 PRELID1-202ENST00000502670 587 ntTSL 327.32■■□□□ 1.961e-16■■■□□ 15.2
DDX55Q8NHQ9 PRELID1-208ENST00000511309 778 ntTSL 226.78■■□□□ 1.881e-16■■■□□ 15.2
DDX55Q8NHQ9 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.741e-16■■■□□ 15.2
DDX55Q8NHQ9 SNRPF-203ENST00000551316 787 ntTSL 217.72■□□□□ 0.431e-16■■■□□ 15.2
DDX55Q8NHQ9 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC16.25■□□□□ 0.191e-16■■■□□ 15.2
DDX55Q8NHQ9 SNRPF-205ENST00000553192 552 ntTSL 4 BASIC15.37■□□□□ 0.051e-16■■■□□ 15.2
DDX55Q8NHQ9 KDM1A-205ENST00000494920 905 ntTSL 313.22□□□□□ -0.295e-6■■■□□ 15.2
DDX55Q8NHQ9 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC19.18■□□□□ 0.663e-20■■■□□ 15.2
DDX55Q8NHQ9 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.363e-20■■■□□ 15.2
DDX55Q8NHQ9 NOP10-201ENST00000328848 554 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.282e-8■■■□□ 15.2
DDX55Q8NHQ9 NOP10-202ENST00000557912 436 ntTSL 2 BASIC6.29□□□□□ -1.42e-8■■■□□ 15.2
DDX55Q8NHQ9 POLR2G-201ENST00000301788 827 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.226e-13■■■□□ 15.1
DDX55Q8NHQ9 POLR2G-203ENST00000525455 919 ntTSL 316.43■□□□□ 0.226e-13■■■□□ 15.1
DDX55Q8NHQ9 POLR2G-202ENST00000524819 1053 ntTSL 316.21■□□□□ 0.196e-13■■■□□ 15.1
DDX55Q8NHQ9 POLR2G-206ENST00000531944 1556 ntTSL 514.74□□□□□ -0.056e-13■■■□□ 15.1
DDX55Q8NHQ9 POLR2G-205ENST00000527435 868 ntTSL 212.02□□□□□ -0.496e-13■■■□□ 15.1
DDX55Q8NHQ9 POLR2G-204ENST00000526368 710 ntTSL 28.77□□□□□ -1.016e-13■■■□□ 15.1
DDX55Q8NHQ9 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC27.88■■■□□ 2.053e-46■■■□□ 15.1
DDX55Q8NHQ9 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC26.31■■□□□ 1.83e-46■■■□□ 15.1
DDX55Q8NHQ9 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.593e-46■■■□□ 15.1
DDX55Q8NHQ9 HNRNPD-211ENST00000514671 1089 ntTSL 59.36□□□□□ -0.913e-46■■■□□ 15.1
DDX55Q8NHQ9 HNRNPD-210ENST00000514325 4597 ntTSL 1 (best)5.2□□□□□ -1.583e-46■■■□□ 15.1
DDX55Q8NHQ9 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC28.41■■■□□ 2.145e-8■■■□□ 15.1
DDX55Q8NHQ9 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC26.26■■□□□ 1.795e-8■■■□□ 15.1
DDX55Q8NHQ9 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 15e-8■■■□□ 15.1
DDX55Q8NHQ9 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.745e-8■■■□□ 15.1
DDX55Q8NHQ9 COMT-201ENST00000207636 1319 ntTSL 518.58■□□□□ 0.575e-8■■■□□ 15.1
DDX55Q8NHQ9 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.575e-8■■■□□ 15.1
DDX55Q8NHQ9 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC22.81■■□□□ 1.246e-7■■■□□ 15.1
DDX55Q8NHQ9 IL32-221ENST00000532247 1381 ntTSL 1 (best)21.6■■□□□ 1.051e-8■■■□□ 15.1
DDX55Q8NHQ9 IL32-209ENST00000525228 566 ntAPPRIS ALT2 TSL 419.92■□□□□ 0.781e-8■■■□□ 15.1
DDX55Q8NHQ9 IL32-228ENST00000548807 810 ntAPPRIS ALT2 TSL 319.83■□□□□ 0.771e-8■■■□□ 15.1
DDX55Q8NHQ9 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.771e-8■■■□□ 15.1
DDX55Q8NHQ9 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC19.5■□□□□ 0.711e-8■■■□□ 15.1
DDX55Q8NHQ9 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC19.08■□□□□ 0.641e-8■■■□□ 15.1
DDX55Q8NHQ9 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC19.03■□□□□ 0.641e-8■■■□□ 15.1
DDX55Q8NHQ9 IL32-225ENST00000548246 447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.391e-8■■■□□ 15.1
DDX55Q8NHQ9 IL32-216ENST00000529699 672 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.391e-8■■■□□ 15.1
DDX55Q8NHQ9 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC27.77■■■□□ 2.046e-24■■■□□ 15.1
DDX55Q8NHQ9 GPX4-208ENST00000592940 1184 ntTSL 527.3■■□□□ 1.966e-24■■■□□ 15.1
DDX55Q8NHQ9 GPX4-207ENST00000589115 812 ntTSL 2 BASIC23.03■■□□□ 1.286e-24■■■□□ 15.1
DDX55Q8NHQ9 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC22.85■■□□□ 1.256e-24■■■□□ 15.1
DDX55Q8NHQ9 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC22.61■■□□□ 1.216e-24■■■□□ 15.1
DDX55Q8NHQ9 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC21.48■■□□□ 1.036e-24■■■□□ 15.1
DDX55Q8NHQ9 GPX4-206ENST00000588919 803 ntTSL 2 BASIC18.54■□□□□ 0.566e-24■■■□□ 15.1
DDX55Q8NHQ9 GPX4-203ENST00000585480 501 ntTSL 218.52■□□□□ 0.566e-24■■■□□ 15.1
DDX55Q8NHQ9 ATXN7L3-210ENST00000591295 3017 ntTSL 513.43□□□□□ -0.265e-7■■■□□ 15.1
DDX55Q8NHQ9 ATXN7L3-202ENST00000454077 3523 ntAPPRIS ALT1 TSL 1 (best) BASIC12.16□□□□□ -0.465e-7■■■□□ 15.1
DDX55Q8NHQ9 ATXN7L3-201ENST00000389384 3811 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.535e-7■■■□□ 15.1
DDX55Q8NHQ9 COX7A2-207ENST00000481061 914 ntTSL 28.82□□□□□ -11e-10■■■□□ 15.1
DDX55Q8NHQ9 LTBP4-225ENST00000599225 281 ntTSL 320.06■□□□□ 0.89e-14■■■□□ 15.1
Retrieved 100 of 15,504 protein–RNA pairs in 161.3 ms