Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 PARP1-210ENST00000629232 477 ntTSL 5 BASIC22.96■■□□□ 1.27
PEX3P56589 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC22.96■■□□□ 1.27
PEX3P56589 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
PEX3P56589 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
PEX3P56589 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC22.96■■□□□ 1.27
PEX3P56589 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC22.96■■□□□ 1.27
PEX3P56589 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
PEX3P56589 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC22.96■■□□□ 1.27
PEX3P56589 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC22.95■■□□□ 1.26
PEX3P56589 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC22.95■■□□□ 1.26
PEX3P56589 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC22.95■■□□□ 1.26
PEX3P56589 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
PEX3P56589 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
PEX3P56589 CROCCP5-201ENST00000436658 830 ntBASIC22.95■■□□□ 1.26
PEX3P56589 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC22.95■■□□□ 1.26
PEX3P56589 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
PEX3P56589 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC22.94■■□□□ 1.26
PEX3P56589 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC22.94■■□□□ 1.26
PEX3P56589 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
PEX3P56589 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC22.94■■□□□ 1.26
PEX3P56589 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
PEX3P56589 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
PEX3P56589 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
PEX3P56589 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
PEX3P56589 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
PEX3P56589 AC091799.1-201ENST00000422823 811 ntBASIC22.94■■□□□ 1.26
PEX3P56589 AC007322.4-201ENST00000509611 723 ntBASIC22.94■■□□□ 1.26
PEX3P56589 PLLP-204ENST00000569059 665 ntTSL 3 BASIC22.94■■□□□ 1.26
PEX3P56589 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC22.94■■□□□ 1.26
PEX3P56589 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
PEX3P56589 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
PEX3P56589 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC22.94■■□□□ 1.26
PEX3P56589 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
PEX3P56589 AC007375.3-201ENST00000600936 2314 ntBASIC22.93■■□□□ 1.26
PEX3P56589 AC068338.2-201ENST00000563278 1430 ntBASIC22.93■■□□□ 1.26
PEX3P56589 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
PEX3P56589 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
PEX3P56589 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC22.93■■□□□ 1.26
PEX3P56589 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
PEX3P56589 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC22.93■■□□□ 1.26
PEX3P56589 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC22.93■■□□□ 1.26
PEX3P56589 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC22.93■■□□□ 1.26
PEX3P56589 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
PEX3P56589 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
PEX3P56589 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC22.92■■□□□ 1.26
PEX3P56589 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC22.92■■□□□ 1.26
PEX3P56589 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC22.92■■□□□ 1.26
PEX3P56589 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
PEX3P56589 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC22.92■■□□□ 1.26
PEX3P56589 MIR663A-201ENST00000385250 93 ntBASIC22.92■■□□□ 1.26
PEX3P56589 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
PEX3P56589 CD44-222ENST00000526025 1052 ntTSL 2 BASIC22.92■■□□□ 1.26
PEX3P56589 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC22.92■■□□□ 1.26
PEX3P56589 AC005181.1-201ENST00000604782 1256 ntBASIC22.92■■□□□ 1.26
PEX3P56589 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC22.92■■□□□ 1.26
PEX3P56589 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
PEX3P56589 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
PEX3P56589 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC22.92■■□□□ 1.26
PEX3P56589 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
PEX3P56589 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
PEX3P56589 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC22.91■■□□□ 1.26
PEX3P56589 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC22.91■■□□□ 1.26
PEX3P56589 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
PEX3P56589 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC22.91■■□□□ 1.26
PEX3P56589 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC22.91■■□□□ 1.26
PEX3P56589 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC22.91■■□□□ 1.26
PEX3P56589 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
PEX3P56589 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
PEX3P56589 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC22.91■■□□□ 1.26
PEX3P56589 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC22.9■■□□□ 1.26
PEX3P56589 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC22.9■■□□□ 1.26
PEX3P56589 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
PEX3P56589 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
PEX3P56589 APTR-203ENST00000430801 583 ntTSL 5 BASIC22.9■■□□□ 1.26
PEX3P56589 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC22.9■■□□□ 1.26
PEX3P56589 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC22.9■■□□□ 1.26
PEX3P56589 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
PEX3P56589 AL050303.2-201ENST00000619798 666 ntBASIC22.9■■□□□ 1.26
PEX3P56589 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
PEX3P56589 AL049796.1-201ENST00000565336 1766 ntBASIC22.9■■□□□ 1.26
PEX3P56589 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC22.9■■□□□ 1.26
PEX3P56589 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
PEX3P56589 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC22.89■■□□□ 1.26
PEX3P56589 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
PEX3P56589 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC22.89■■□□□ 1.26
PEX3P56589 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC22.89■■□□□ 1.26
PEX3P56589 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
PEX3P56589 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC22.89■■□□□ 1.26
PEX3P56589 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
PEX3P56589 AC006970.2-201ENST00000450065 779 ntBASIC22.89■■□□□ 1.25
PEX3P56589 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC22.89■■□□□ 1.25
PEX3P56589 PPP1R14BP3-201ENST00000509033 445 ntBASIC22.89■■□□□ 1.25
PEX3P56589 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
PEX3P56589 AL591742.1-201ENST00000604433 565 ntBASIC22.89■■□□□ 1.25
PEX3P56589 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
PEX3P56589 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.89■■□□□ 1.25
PEX3P56589 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
PEX3P56589 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
PEX3P56589 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC22.89■■□□□ 1.25
PEX3P56589 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms