Protein–RNA interactions for Protein: P56277

CMC4, Cx9C motif-containing protein 4, humanhuman

Predicted RBP Predictions only

Length 68 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMC4P56277 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
CMC4P56277 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CMC4P56277 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
CMC4P56277 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CMC4P56277 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CMC4P56277 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CMC4P56277 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CMC4P56277 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CMC4P56277 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CMC4P56277 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CMC4P56277 RBM17P2-201ENST00000616397 1405 ntBASIC15.51■□□□□ 0.07
CMC4P56277 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC15.51■□□□□ 0.07
CMC4P56277 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
CMC4P56277 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CMC4P56277 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CMC4P56277 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC15.5■□□□□ 0.07
CMC4P56277 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC15.5■□□□□ 0.07
CMC4P56277 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC15.5■□□□□ 0.07
CMC4P56277 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC15.5■□□□□ 0.07
CMC4P56277 BMP1-204ENST00000397814 836 ntTSL 4 BASIC15.5■□□□□ 0.07
CMC4P56277 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC15.5■□□□□ 0.07
CMC4P56277 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC15.5■□□□□ 0.07
CMC4P56277 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC15.5■□□□□ 0.07
CMC4P56277 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC15.5■□□□□ 0.07
CMC4P56277 PARP1-210ENST00000629232 477 ntTSL 5 BASIC15.5■□□□□ 0.07
CMC4P56277 AC008694.1-202ENST00000636953 945 ntBASIC15.5■□□□□ 0.07
CMC4P56277 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CMC4P56277 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC15.5■□□□□ 0.07
CMC4P56277 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC15.5■□□□□ 0.07
CMC4P56277 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CMC4P56277 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CMC4P56277 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CMC4P56277 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC15.49■□□□□ 0.07
CMC4P56277 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
CMC4P56277 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CMC4P56277 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CMC4P56277 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
CMC4P56277 MYB-221ENST00000527615 2381 ntTSL 5 BASIC15.49■□□□□ 0.07
CMC4P56277 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CMC4P56277 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CMC4P56277 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
CMC4P56277 ME2-206ENST00000638410 2289 ntTSL 5 BASIC15.49■□□□□ 0.07
CMC4P56277 ME2-210ENST00000639255 2262 ntTSL 5 BASIC15.49■□□□□ 0.07
CMC4P56277 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
CMC4P56277 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CMC4P56277 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
CMC4P56277 MFSD11-216ENST00000590393 1141 ntBASIC15.49■□□□□ 0.07
CMC4P56277 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
CMC4P56277 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CMC4P56277 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC15.49■□□□□ 0.07
CMC4P56277 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
CMC4P56277 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CMC4P56277 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
CMC4P56277 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CMC4P56277 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CMC4P56277 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC15.49■□□□□ 0.07
CMC4P56277 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CMC4P56277 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CMC4P56277 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CMC4P56277 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
CMC4P56277 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CMC4P56277 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CMC4P56277 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CMC4P56277 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CMC4P56277 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
CMC4P56277 AC026185.1-201ENST00000445748 174 ntBASIC15.48■□□□□ 0.07
CMC4P56277 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC15.48■□□□□ 0.07
CMC4P56277 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC15.48■□□□□ 0.07
CMC4P56277 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC15.48■□□□□ 0.07
CMC4P56277 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC15.48■□□□□ 0.07
CMC4P56277 Z98882.1-201ENST00000622160 2253 ntBASIC15.48■□□□□ 0.07
CMC4P56277 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC15.48■□□□□ 0.07
CMC4P56277 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
CMC4P56277 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CMC4P56277 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CMC4P56277 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC15.48■□□□□ 0.07
CMC4P56277 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC15.47■□□□□ 0.07
CMC4P56277 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CMC4P56277 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
CMC4P56277 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
CMC4P56277 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC15.47■□□□□ 0.07
CMC4P56277 DUX4L16-201ENST00000555130 1264 ntBASIC15.47■□□□□ 0.07
CMC4P56277 AC069236.1-201ENST00000604339 616 ntBASIC15.47■□□□□ 0.07
CMC4P56277 IKBKGP1-201ENST00000612193 1073 ntBASIC15.47■□□□□ 0.07
CMC4P56277 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CMC4P56277 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CMC4P56277 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
CMC4P56277 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CMC4P56277 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC15.47■□□□□ 0.07
CMC4P56277 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CMC4P56277 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CMC4P56277 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC15.47■□□□□ 0.07
CMC4P56277 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CMC4P56277 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
CMC4P56277 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
CMC4P56277 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
CMC4P56277 SAPCD2P1-201ENST00000395413 1184 ntBASIC15.46■□□□□ 0.07
CMC4P56277 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
CMC4P56277 DLX3-202ENST00000512495 834 ntTSL 2 BASIC15.46■□□□□ 0.07
CMC4P56277 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC15.46■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms