Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CDH6P55285 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CDH6P55285 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CDH6P55285 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CDH6P55285 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC21.6■■□□□ 1.05
CDH6P55285 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CDH6P55285 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CDH6P55285 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC21.6■■□□□ 1.05
CDH6P55285 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC21.6■■□□□ 1.05
CDH6P55285 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
CDH6P55285 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.6■■□□□ 1.05
CDH6P55285 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.6■■□□□ 1.05
CDH6P55285 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CDH6P55285 AC121338.2-201ENST00000622535 1744 ntBASIC21.6■■□□□ 1.05
CDH6P55285 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CDH6P55285 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
CDH6P55285 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
CDH6P55285 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CDH6P55285 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.59■■□□□ 1.05
CDH6P55285 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
CDH6P55285 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
CDH6P55285 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC21.59■■□□□ 1.05
CDH6P55285 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CDH6P55285 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CDH6P55285 AC120498.10-201ENST00000621827 505 ntBASIC21.59■■□□□ 1.05
CDH6P55285 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CDH6P55285 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CDH6P55285 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CDH6P55285 AC006128.1-201ENST00000624704 1661 ntBASIC21.59■■□□□ 1.05
CDH6P55285 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CDH6P55285 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC21.59■■□□□ 1.05
CDH6P55285 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC21.59■■□□□ 1.05
CDH6P55285 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC21.59■■□□□ 1.05
CDH6P55285 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC21.59■■□□□ 1.05
CDH6P55285 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
CDH6P55285 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CDH6P55285 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CDH6P55285 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CDH6P55285 KRT16P2-201ENST00000414673 1423 ntBASIC21.58■■□□□ 1.05
CDH6P55285 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CDH6P55285 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CDH6P55285 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
CDH6P55285 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CDH6P55285 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CDH6P55285 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.58■■□□□ 1.05
CDH6P55285 PLD4-205ENST00000553861 667 ntTSL 2 BASIC21.58■■□□□ 1.05
CDH6P55285 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
CDH6P55285 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
CDH6P55285 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
CDH6P55285 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.04
CDH6P55285 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC21.57■■□□□ 1.04
CDH6P55285 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
CDH6P55285 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CDH6P55285 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CDH6P55285 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
CDH6P55285 ERF-202ENST00000440177 2032 ntTSL 2 BASIC21.57■■□□□ 1.04
CDH6P55285 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC21.57■■□□□ 1.04
CDH6P55285 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC21.57■■□□□ 1.04
CDH6P55285 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CDH6P55285 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
CDH6P55285 SLC7A5P2-201ENST00000553010 536 ntBASIC21.57■■□□□ 1.04
CDH6P55285 RARRES2P6-201ENST00000567333 442 ntBASIC21.57■■□□□ 1.04
CDH6P55285 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
CDH6P55285 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CDH6P55285 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CDH6P55285 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CDH6P55285 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
CDH6P55285 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CDH6P55285 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC21.56■■□□□ 1.04
CDH6P55285 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CDH6P55285 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CDH6P55285 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CDH6P55285 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CDH6P55285 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
CDH6P55285 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CDH6P55285 AC034268.1-201ENST00000441047 882 ntBASIC21.56■■□□□ 1.04
CDH6P55285 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC21.56■■□□□ 1.04
CDH6P55285 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC21.56■■□□□ 1.04
CDH6P55285 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC21.56■■□□□ 1.04
CDH6P55285 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CDH6P55285 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
CDH6P55285 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
CDH6P55285 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CDH6P55285 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CDH6P55285 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
CDH6P55285 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CDH6P55285 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC21.56■■□□□ 1.04
CDH6P55285 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CDH6P55285 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC21.55■■□□□ 1.04
CDH6P55285 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CDH6P55285 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
CDH6P55285 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC21.55■■□□□ 1.04
CDH6P55285 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CDH6P55285 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
CDH6P55285 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CDH6P55285 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CDH6P55285 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
CDH6P55285 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CDH6P55285 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CDH6P55285 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms