Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
TNFRSF4P43489 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
TNFRSF4P43489 AC008403.3-201ENST00000598924 454 ntBASIC21.02■□□□□ 0.96
TNFRSF4P43489 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
TNFRSF4P43489 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
TNFRSF4P43489 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC21.02■□□□□ 0.95
TNFRSF4P43489 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
TNFRSF4P43489 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
TNFRSF4P43489 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
TNFRSF4P43489 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.95
TNFRSF4P43489 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC21.01■□□□□ 0.95
TNFRSF4P43489 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TNFRSF4P43489 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TNFRSF4P43489 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.01■□□□□ 0.95
TNFRSF4P43489 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.01■□□□□ 0.95
TNFRSF4P43489 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TNFRSF4P43489 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TNFRSF4P43489 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TNFRSF4P43489 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TNFRSF4P43489 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TNFRSF4P43489 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC21.01■□□□□ 0.95
TNFRSF4P43489 PNMA6B-201ENST00000538162 1200 ntBASIC21.01■□□□□ 0.95
TNFRSF4P43489 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC21.01■□□□□ 0.95
TNFRSF4P43489 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC21.01■□□□□ 0.95
TNFRSF4P43489 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC21.01■□□□□ 0.95
TNFRSF4P43489 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC21.01■□□□□ 0.95
TNFRSF4P43489 AC242852.2-201ENST00000615738 1807 ntBASIC21.01■□□□□ 0.95
TNFRSF4P43489 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TNFRSF4P43489 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TNFRSF4P43489 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TNFRSF4P43489 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TNFRSF4P43489 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
TNFRSF4P43489 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21■□□□□ 0.95
TNFRSF4P43489 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21■□□□□ 0.95
TNFRSF4P43489 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TNFRSF4P43489 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21■□□□□ 0.95
TNFRSF4P43489 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC21■□□□□ 0.95
TNFRSF4P43489 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC21■□□□□ 0.95
TNFRSF4P43489 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC21■□□□□ 0.95
TNFRSF4P43489 UNC93B4-201ENST00000505679 747 ntBASIC21■□□□□ 0.95
TNFRSF4P43489 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
TNFRSF4P43489 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC21■□□□□ 0.95
TNFRSF4P43489 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
TNFRSF4P43489 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC21■□□□□ 0.95
TNFRSF4P43489 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
TNFRSF4P43489 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC21■□□□□ 0.95
TNFRSF4P43489 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
TNFRSF4P43489 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TNFRSF4P43489 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21■□□□□ 0.95
TNFRSF4P43489 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21■□□□□ 0.95
TNFRSF4P43489 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TNFRSF4P43489 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
TNFRSF4P43489 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TNFRSF4P43489 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.99■□□□□ 0.95
TNFRSF4P43489 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TNFRSF4P43489 AC092368.3-202ENST00000574180 1591 ntBASIC20.99■□□□□ 0.95
TNFRSF4P43489 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
TNFRSF4P43489 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TNFRSF4P43489 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC20.99■□□□□ 0.95
TNFRSF4P43489 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
TNFRSF4P43489 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC20.99■□□□□ 0.95
TNFRSF4P43489 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC20.99■□□□□ 0.95
TNFRSF4P43489 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC20.99■□□□□ 0.95
TNFRSF4P43489 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TNFRSF4P43489 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TNFRSF4P43489 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.99■□□□□ 0.95
TNFRSF4P43489 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TNFRSF4P43489 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.99■□□□□ 0.95
TNFRSF4P43489 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.99■□□□□ 0.95
TNFRSF4P43489 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
TNFRSF4P43489 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
TNFRSF4P43489 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
TNFRSF4P43489 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TNFRSF4P43489 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TNFRSF4P43489 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TNFRSF4P43489 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
TNFRSF4P43489 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
TNFRSF4P43489 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.98■□□□□ 0.95
TNFRSF4P43489 MFF-205ENST00000354503 1085 ntTSL 2 BASIC20.98■□□□□ 0.95
TNFRSF4P43489 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TNFRSF4P43489 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC20.98■□□□□ 0.95
TNFRSF4P43489 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TNFRSF4P43489 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.98■□□□□ 0.95
TNFRSF4P43489 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC20.98■□□□□ 0.95
TNFRSF4P43489 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.98■□□□□ 0.95
TNFRSF4P43489 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
TNFRSF4P43489 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TNFRSF4P43489 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TNFRSF4P43489 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
TNFRSF4P43489 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
TNFRSF4P43489 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TNFRSF4P43489 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TNFRSF4P43489 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TNFRSF4P43489 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC20.97■□□□□ 0.95
TNFRSF4P43489 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.97■□□□□ 0.95
TNFRSF4P43489 AC105020.6-201ENST00000621523 1217 ntBASIC20.97■□□□□ 0.95
TNFRSF4P43489 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TNFRSF4P43489 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
TNFRSF4P43489 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
TNFRSF4P43489 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms