Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 ANKRD20A6P-201ENST00000618763 204 ntBASIC20.12■□□□□ 0.81
HNF4AP41235 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HNF4AP41235 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC20.12■□□□□ 0.81
HNF4AP41235 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HNF4AP41235 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.12■□□□□ 0.81
HNF4AP41235 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HNF4AP41235 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
HNF4AP41235 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
HNF4AP41235 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HNF4AP41235 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HNF4AP41235 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HNF4AP41235 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HNF4AP41235 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
HNF4AP41235 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.11■□□□□ 0.81
HNF4AP41235 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HNF4AP41235 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
HNF4AP41235 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
HNF4AP41235 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.11■□□□□ 0.81
HNF4AP41235 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HNF4AP41235 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HNF4AP41235 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
HNF4AP41235 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
HNF4AP41235 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
HNF4AP41235 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC20.11■□□□□ 0.81
HNF4AP41235 GALNS-213ENST00000569433 723 ntTSL 3 BASIC20.11■□□□□ 0.81
HNF4AP41235 KRT18P61-201ENST00000585825 1298 ntBASIC20.11■□□□□ 0.81
HNF4AP41235 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.11■□□□□ 0.81
HNF4AP41235 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.11■□□□□ 0.81
HNF4AP41235 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.11■□□□□ 0.81
HNF4AP41235 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.11■□□□□ 0.81
HNF4AP41235 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HNF4AP41235 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HNF4AP41235 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HNF4AP41235 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HNF4AP41235 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HNF4AP41235 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
HNF4AP41235 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
HNF4AP41235 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC20.1■□□□□ 0.81
HNF4AP41235 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
HNF4AP41235 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC20.1■□□□□ 0.81
HNF4AP41235 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC20.1■□□□□ 0.81
HNF4AP41235 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC20.1■□□□□ 0.81
HNF4AP41235 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC20.1■□□□□ 0.81
HNF4AP41235 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
HNF4AP41235 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
HNF4AP41235 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HNF4AP41235 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.1■□□□□ 0.81
HNF4AP41235 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC20.1■□□□□ 0.81
HNF4AP41235 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HNF4AP41235 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
HNF4AP41235 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HNF4AP41235 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
HNF4AP41235 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.09■□□□□ 0.81
HNF4AP41235 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.09■□□□□ 0.81
HNF4AP41235 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.09■□□□□ 0.81
HNF4AP41235 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HNF4AP41235 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC20.09■□□□□ 0.81
HNF4AP41235 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HNF4AP41235 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC20.09■□□□□ 0.81
HNF4AP41235 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HNF4AP41235 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HNF4AP41235 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
HNF4AP41235 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HNF4AP41235 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HNF4AP41235 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HNF4AP41235 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HNF4AP41235 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.09■□□□□ 0.81
HNF4AP41235 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HNF4AP41235 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.09■□□□□ 0.81
HNF4AP41235 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HNF4AP41235 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
HNF4AP41235 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
HNF4AP41235 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
HNF4AP41235 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
HNF4AP41235 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
HNF4AP41235 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.08■□□□□ 0.81
HNF4AP41235 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
HNF4AP41235 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
HNF4AP41235 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
HNF4AP41235 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
HNF4AP41235 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.08■□□□□ 0.81
HNF4AP41235 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
HNF4AP41235 KRT18P5-201ENST00000436075 1291 ntBASIC20.08■□□□□ 0.81
HNF4AP41235 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.08■□□□□ 0.81
HNF4AP41235 AC010141.2-201ENST00000452426 721 ntBASIC20.08■□□□□ 0.81
HNF4AP41235 AL162430.1-201ENST00000480705 870 ntBASIC20.08■□□□□ 0.81
HNF4AP41235 AC120498.10-201ENST00000621827 505 ntBASIC20.08■□□□□ 0.81
HNF4AP41235 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
HNF4AP41235 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.08■□□□□ 0.8
HNF4AP41235 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
HNF4AP41235 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
HNF4AP41235 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
HNF4AP41235 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
HNF4AP41235 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
HNF4AP41235 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HNF4AP41235 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.07■□□□□ 0.8
HNF4AP41235 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HNF4AP41235 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.07■□□□□ 0.8
HNF4AP41235 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC20.07■□□□□ 0.8
HNF4AP41235 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms