Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
VCANP13611 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
VCANP13611 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC21.77■■□□□ 1.08
VCANP13611 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC21.77■■□□□ 1.08
VCANP13611 AL589743.5-201ENST00000616611 1050 ntBASIC21.77■■□□□ 1.08
VCANP13611 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
VCANP13611 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.07
VCANP13611 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
VCANP13611 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC21.76■■□□□ 1.07
VCANP13611 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC21.76■■□□□ 1.07
VCANP13611 THEM4-205ENST00000489410 643 ntTSL 2 BASIC21.76■■□□□ 1.07
VCANP13611 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC21.76■■□□□ 1.07
VCANP13611 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VCANP13611 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC21.76■■□□□ 1.07
VCANP13611 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VCANP13611 AC027702.1-201ENST00000563810 1770 ntBASIC21.76■■□□□ 1.07
VCANP13611 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VCANP13611 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VCANP13611 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VCANP13611 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VCANP13611 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC21.76■■□□□ 1.07
VCANP13611 AC004812.2-201ENST00000611079 2094 ntBASIC21.76■■□□□ 1.07
VCANP13611 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VCANP13611 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
VCANP13611 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VCANP13611 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
VCANP13611 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
VCANP13611 MYC-208ENST00000641036 567 ntBASIC21.76■■□□□ 1.07
VCANP13611 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
VCANP13611 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC21.75■■□□□ 1.07
VCANP13611 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
VCANP13611 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC21.75■■□□□ 1.07
VCANP13611 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC21.75■■□□□ 1.07
VCANP13611 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
VCANP13611 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.75■■□□□ 1.07
VCANP13611 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VCANP13611 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
VCANP13611 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC21.75■■□□□ 1.07
VCANP13611 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VCANP13611 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC21.75■■□□□ 1.07
VCANP13611 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
VCANP13611 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC21.75■■□□□ 1.07
VCANP13611 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC21.75■■□□□ 1.07
VCANP13611 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC21.75■■□□□ 1.07
VCANP13611 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
VCANP13611 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC21.74■■□□□ 1.07
VCANP13611 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC21.74■■□□□ 1.07
VCANP13611 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
VCANP13611 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC21.74■■□□□ 1.07
VCANP13611 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC21.74■■□□□ 1.07
VCANP13611 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC21.74■■□□□ 1.07
VCANP13611 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC21.74■■□□□ 1.07
VCANP13611 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
VCANP13611 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VCANP13611 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC21.74■■□□□ 1.07
VCANP13611 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
VCANP13611 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
VCANP13611 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VCANP13611 AP004607.7-201ENST00000527152 1677 ntBASIC21.74■■□□□ 1.07
VCANP13611 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
VCANP13611 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC21.74■■□□□ 1.07
VCANP13611 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC21.73■■□□□ 1.07
VCANP13611 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC21.73■■□□□ 1.07
VCANP13611 AC006538.3-201ENST00000612495 578 ntBASIC21.73■■□□□ 1.07
VCANP13611 REXO1L10P-201ENST00000615707 1290 ntBASIC21.73■■□□□ 1.07
VCANP13611 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VCANP13611 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VCANP13611 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VCANP13611 KRT16P2-201ENST00000414673 1423 ntBASIC21.73■■□□□ 1.07
VCANP13611 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC21.73■■□□□ 1.07
VCANP13611 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
VCANP13611 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC21.73■■□□□ 1.07
VCANP13611 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC21.73■■□□□ 1.07
VCANP13611 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC21.73■■□□□ 1.07
VCANP13611 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC21.73■■□□□ 1.07
VCANP13611 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
VCANP13611 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
VCANP13611 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VCANP13611 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
VCANP13611 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
VCANP13611 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
VCANP13611 PVRIG2P-201ENST00000435460 978 ntBASIC21.72■■□□□ 1.07
VCANP13611 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC21.72■■□□□ 1.07
VCANP13611 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC21.72■■□□□ 1.07
VCANP13611 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC21.72■■□□□ 1.07
VCANP13611 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
VCANP13611 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21.72■■□□□ 1.07
VCANP13611 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VCANP13611 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VCANP13611 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.72■■□□□ 1.07
VCANP13611 AC010947.1-201ENST00000623454 693 ntBASIC21.71■■□□□ 1.07
VCANP13611 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
VCANP13611 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
VCANP13611 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VCANP13611 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VCANP13611 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC21.71■■□□□ 1.07
VCANP13611 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
VCANP13611 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
VCANP13611 GLDC-219ENST00000640208 420 ntTSL 2 BASIC21.71■■□□□ 1.07
VCANP13611 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms