Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS4BO75351 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.34■□□□□ 0.85
VPS4BO75351 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS4BO75351 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VPS4BO75351 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.33■□□□□ 0.85
VPS4BO75351 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VPS4BO75351 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
VPS4BO75351 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VPS4BO75351 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC20.33■□□□□ 0.85
VPS4BO75351 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC20.33■□□□□ 0.85
VPS4BO75351 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.33■□□□□ 0.84
VPS4BO75351 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
VPS4BO75351 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.33■□□□□ 0.84
VPS4BO75351 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.33■□□□□ 0.84
VPS4BO75351 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.33■□□□□ 0.84
VPS4BO75351 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS4BO75351 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.32■□□□□ 0.84
VPS4BO75351 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS4BO75351 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.32■□□□□ 0.84
VPS4BO75351 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
VPS4BO75351 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS4BO75351 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS4BO75351 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.32■□□□□ 0.84
VPS4BO75351 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS4BO75351 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VPS4BO75351 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS4BO75351 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
VPS4BO75351 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS4BO75351 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
VPS4BO75351 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS4BO75351 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.31■□□□□ 0.84
VPS4BO75351 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS4BO75351 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS4BO75351 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS4BO75351 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.31■□□□□ 0.84
VPS4BO75351 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.31■□□□□ 0.84
VPS4BO75351 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.31■□□□□ 0.84
VPS4BO75351 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.31■□□□□ 0.84
VPS4BO75351 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC20.31■□□□□ 0.84
VPS4BO75351 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC20.31■□□□□ 0.84
VPS4BO75351 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VPS4BO75351 TERF1P2-201ENST00000583350 1212 ntBASIC20.31■□□□□ 0.84
VPS4BO75351 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
VPS4BO75351 AC080038.1-201ENST00000611274 1154 ntBASIC20.31■□□□□ 0.84
VPS4BO75351 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VPS4BO75351 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
VPS4BO75351 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.31■□□□□ 0.84
VPS4BO75351 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS4BO75351 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS4BO75351 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.31■□□□□ 0.84
VPS4BO75351 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.3■□□□□ 0.84
VPS4BO75351 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.3■□□□□ 0.84
VPS4BO75351 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.3■□□□□ 0.84
VPS4BO75351 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC20.3■□□□□ 0.84
VPS4BO75351 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS4BO75351 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS4BO75351 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
VPS4BO75351 AC006128.1-201ENST00000624704 1661 ntBASIC20.3■□□□□ 0.84
VPS4BO75351 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS4BO75351 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS4BO75351 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS4BO75351 ME3-201ENST00000323418 1068 ntTSL 5 BASIC20.3■□□□□ 0.84
VPS4BO75351 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.3■□□□□ 0.84
VPS4BO75351 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VPS4BO75351 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC20.3■□□□□ 0.84
VPS4BO75351 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VPS4BO75351 LINC01006-201ENST00000333319 2292 ntBASIC20.3■□□□□ 0.84
VPS4BO75351 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
VPS4BO75351 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
VPS4BO75351 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS4BO75351 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.3■□□□□ 0.84
VPS4BO75351 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.29■□□□□ 0.84
VPS4BO75351 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS4BO75351 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
VPS4BO75351 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
VPS4BO75351 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS4BO75351 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS4BO75351 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VPS4BO75351 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VPS4BO75351 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS4BO75351 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS4BO75351 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VPS4BO75351 AC016769.1-201ENST00000409132 1010 ntBASIC20.29■□□□□ 0.84
VPS4BO75351 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VPS4BO75351 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC20.29■□□□□ 0.84
VPS4BO75351 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VPS4BO75351 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.29■□□□□ 0.84
VPS4BO75351 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.29■□□□□ 0.84
VPS4BO75351 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VPS4BO75351 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS4BO75351 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.29■□□□□ 0.84
VPS4BO75351 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS4BO75351 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS4BO75351 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.28■□□□□ 0.84
VPS4BO75351 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS4BO75351 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
VPS4BO75351 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS4BO75351 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS4BO75351 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
VPS4BO75351 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms