Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PRKNO60260 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
PRKNO60260 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.37■□□□□ 0.69
PRKNO60260 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
PRKNO60260 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PRKNO60260 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.37■□□□□ 0.69
PRKNO60260 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PRKNO60260 MAP2K4P1-201ENST00000438453 1195 ntBASIC19.37■□□□□ 0.69
PRKNO60260 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
PRKNO60260 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC19.37■□□□□ 0.69
PRKNO60260 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.37■□□□□ 0.69
PRKNO60260 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.37■□□□□ 0.69
PRKNO60260 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PRKNO60260 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PRKNO60260 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PRKNO60260 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
PRKNO60260 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PRKNO60260 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
PRKNO60260 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.37■□□□□ 0.69
PRKNO60260 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.36■□□□□ 0.69
PRKNO60260 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
PRKNO60260 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.36■□□□□ 0.69
PRKNO60260 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
PRKNO60260 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PRKNO60260 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
PRKNO60260 AC006970.2-201ENST00000450065 779 ntBASIC19.36■□□□□ 0.69
PRKNO60260 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.36■□□□□ 0.69
PRKNO60260 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.36■□□□□ 0.69
PRKNO60260 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.36■□□□□ 0.69
PRKNO60260 AC005181.1-201ENST00000604782 1256 ntBASIC19.36■□□□□ 0.69
PRKNO60260 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC19.36■□□□□ 0.69
PRKNO60260 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PRKNO60260 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.36■□□□□ 0.69
PRKNO60260 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PRKNO60260 FEM1AP4-201ENST00000443167 1987 ntBASIC19.35■□□□□ 0.69
PRKNO60260 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PRKNO60260 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PRKNO60260 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
PRKNO60260 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PRKNO60260 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PRKNO60260 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
PRKNO60260 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC19.35■□□□□ 0.69
PRKNO60260 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
PRKNO60260 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PRKNO60260 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.35■□□□□ 0.69
PRKNO60260 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PRKNO60260 AC013268.1-206ENST00000638368 961 ntBASIC19.35■□□□□ 0.69
PRKNO60260 AC112229.1-201ENST00000639295 961 ntBASIC19.35■□□□□ 0.69
PRKNO60260 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.35■□□□□ 0.69
PRKNO60260 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
PRKNO60260 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.35■□□□□ 0.69
PRKNO60260 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PRKNO60260 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
PRKNO60260 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PRKNO60260 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.34■□□□□ 0.69
PRKNO60260 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
PRKNO60260 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PRKNO60260 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.34■□□□□ 0.69
PRKNO60260 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PRKNO60260 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.34■□□□□ 0.69
PRKNO60260 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.34■□□□□ 0.69
PRKNO60260 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.34■□□□□ 0.69
PRKNO60260 WT1-AS_3.1-201ENST00000613262 234 ntBASIC19.34■□□□□ 0.69
PRKNO60260 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.34■□□□□ 0.69
PRKNO60260 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.34■□□□□ 0.69
PRKNO60260 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PRKNO60260 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.34■□□□□ 0.69
PRKNO60260 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
PRKNO60260 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
PRKNO60260 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
PRKNO60260 AC068338.2-201ENST00000563278 1430 ntBASIC19.34■□□□□ 0.69
PRKNO60260 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
PRKNO60260 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
PRKNO60260 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.33■□□□□ 0.69
PRKNO60260 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
PRKNO60260 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
PRKNO60260 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
PRKNO60260 ID1-201ENST00000376105 1233 ntBASIC19.33■□□□□ 0.68
PRKNO60260 HLA-L-209ENST00000420110 1011 ntBASIC19.33■□□□□ 0.68
PRKNO60260 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC19.33■□□□□ 0.68
PRKNO60260 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.33■□□□□ 0.68
PRKNO60260 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
PRKNO60260 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
PRKNO60260 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PRKNO60260 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
PRKNO60260 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PRKNO60260 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
PRKNO60260 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PRKNO60260 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PRKNO60260 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PRKNO60260 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
PRKNO60260 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PRKNO60260 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.32■□□□□ 0.68
PRKNO60260 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PRKNO60260 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PRKNO60260 AC007322.4-201ENST00000509611 723 ntBASIC19.32■□□□□ 0.68
PRKNO60260 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC19.32■□□□□ 0.68
PRKNO60260 AC243732.1-201ENST00000612648 864 ntBASIC19.32■□□□□ 0.68
PRKNO60260 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.32■□□□□ 0.68
PRKNO60260 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms