Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
TRIM49D1C9J1S8 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
TRIM49D1C9J1S8 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.81■□□□□ 0.92
TRIM49D1C9J1S8 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
TRIM49D1C9J1S8 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM49D1C9J1S8 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM49D1C9J1S8 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM49D1C9J1S8 IGHV3-19-201ENST00000521488 291 ntBASIC20.81■□□□□ 0.92
TRIM49D1C9J1S8 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.81■□□□□ 0.92
TRIM49D1C9J1S8 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM49D1C9J1S8 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.81■□□□□ 0.92
TRIM49D1C9J1S8 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.81■□□□□ 0.92
TRIM49D1C9J1S8 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM49D1C9J1S8 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.81■□□□□ 0.92
TRIM49D1C9J1S8 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM49D1C9J1S8 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.81■□□□□ 0.92
TRIM49D1C9J1S8 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.81■□□□□ 0.92
TRIM49D1C9J1S8 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.8■□□□□ 0.92
TRIM49D1C9J1S8 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
TRIM49D1C9J1S8 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM49D1C9J1S8 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM49D1C9J1S8 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM49D1C9J1S8 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM49D1C9J1S8 AL136116.3-201ENST00000402907 1138 ntBASIC20.8■□□□□ 0.92
TRIM49D1C9J1S8 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC20.8■□□□□ 0.92
TRIM49D1C9J1S8 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM49D1C9J1S8 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM49D1C9J1S8 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
TRIM49D1C9J1S8 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM49D1C9J1S8 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM49D1C9J1S8 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM49D1C9J1S8 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.79■□□□□ 0.92
TRIM49D1C9J1S8 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.79■□□□□ 0.92
TRIM49D1C9J1S8 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
TRIM49D1C9J1S8 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
TRIM49D1C9J1S8 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.79■□□□□ 0.92
TRIM49D1C9J1S8 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.79■□□□□ 0.92
TRIM49D1C9J1S8 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
TRIM49D1C9J1S8 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.79■□□□□ 0.92
TRIM49D1C9J1S8 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.79■□□□□ 0.92
TRIM49D1C9J1S8 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM49D1C9J1S8 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.79■□□□□ 0.92
TRIM49D1C9J1S8 UNC93B3-201ENST00000308076 687 ntBASIC20.79■□□□□ 0.92
TRIM49D1C9J1S8 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM49D1C9J1S8 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM49D1C9J1S8 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM49D1C9J1S8 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
TRIM49D1C9J1S8 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM49D1C9J1S8 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM49D1C9J1S8 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
TRIM49D1C9J1S8 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
TRIM49D1C9J1S8 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM49D1C9J1S8 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM49D1C9J1S8 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM49D1C9J1S8 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM49D1C9J1S8 AC005224.4-201ENST00000583262 1652 ntBASIC20.78■□□□□ 0.92
TRIM49D1C9J1S8 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
TRIM49D1C9J1S8 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM49D1C9J1S8 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM49D1C9J1S8 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM49D1C9J1S8 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM49D1C9J1S8 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM49D1C9J1S8 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.78■□□□□ 0.92
TRIM49D1C9J1S8 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.78■□□□□ 0.92
TRIM49D1C9J1S8 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM49D1C9J1S8 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM49D1C9J1S8 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.77■□□□□ 0.92
TRIM49D1C9J1S8 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
TRIM49D1C9J1S8 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
TRIM49D1C9J1S8 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM49D1C9J1S8 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.77■□□□□ 0.92
TRIM49D1C9J1S8 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM49D1C9J1S8 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM49D1C9J1S8 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM49D1C9J1S8 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM49D1C9J1S8 AC024257.2-201ENST00000549699 147 ntBASIC20.77■□□□□ 0.92
TRIM49D1C9J1S8 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.77■□□□□ 0.92
TRIM49D1C9J1S8 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM49D1C9J1S8 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM49D1C9J1S8 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM49D1C9J1S8 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.77■□□□□ 0.91
TRIM49D1C9J1S8 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
TRIM49D1C9J1S8 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
TRIM49D1C9J1S8 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.91
TRIM49D1C9J1S8 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
TRIM49D1C9J1S8 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC20.77■□□□□ 0.91
TRIM49D1C9J1S8 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.76■□□□□ 0.91
TRIM49D1C9J1S8 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
TRIM49D1C9J1S8 AFG3L1P-217ENST00000557444 2447 ntBASIC20.76■□□□□ 0.91
TRIM49D1C9J1S8 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM49D1C9J1S8 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM49D1C9J1S8 FP700111.2-201ENST00000619190 1892 ntBASIC20.76■□□□□ 0.91
TRIM49D1C9J1S8 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM49D1C9J1S8 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.76■□□□□ 0.91
TRIM49D1C9J1S8 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM49D1C9J1S8 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.76■□□□□ 0.91
TRIM49D1C9J1S8 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.76■□□□□ 0.91
TRIM49D1C9J1S8 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.76■□□□□ 0.91
TRIM49D1C9J1S8 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM49D1C9J1S8 BX005040.4-201ENST00000637145 1518 ntBASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms