Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV41A0A0B4J266 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV41A0A0B4J266 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV41A0A0B4J266 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV41A0A0B4J266 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV41A0A0B4J266 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV41A0A0B4J266 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC16.38■□□□□ 0.21
TRAV41A0A0B4J266 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC16.38■□□□□ 0.21
TRAV41A0A0B4J266 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC16.38■□□□□ 0.21
TRAV41A0A0B4J266 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC16.38■□□□□ 0.21
TRAV41A0A0B4J266 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
TRAV41A0A0B4J266 FGF8-207ENST00000618991 856 ntTSL 3 BASIC16.38■□□□□ 0.21
TRAV41A0A0B4J266 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV41A0A0B4J266 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV41A0A0B4J266 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV41A0A0B4J266 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC16.38■□□□□ 0.21
TRAV41A0A0B4J266 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRAV41A0A0B4J266 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAV41A0A0B4J266 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAV41A0A0B4J266 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
TRAV41A0A0B4J266 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
TRAV41A0A0B4J266 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
TRAV41A0A0B4J266 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAV41A0A0B4J266 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAV41A0A0B4J266 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TRAV41A0A0B4J266 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAV41A0A0B4J266 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC16.37■□□□□ 0.21
TRAV41A0A0B4J266 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAV41A0A0B4J266 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAV41A0A0B4J266 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC16.37■□□□□ 0.21
TRAV41A0A0B4J266 BMP1-204ENST00000397814 836 ntTSL 4 BASIC16.37■□□□□ 0.21
TRAV41A0A0B4J266 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC16.37■□□□□ 0.21
TRAV41A0A0B4J266 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC16.37■□□□□ 0.21
TRAV41A0A0B4J266 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC16.37■□□□□ 0.21
TRAV41A0A0B4J266 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
TRAV41A0A0B4J266 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAV41A0A0B4J266 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
TRAV41A0A0B4J266 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAV41A0A0B4J266 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
TRAV41A0A0B4J266 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC16.37■□□□□ 0.21
TRAV41A0A0B4J266 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
TRAV41A0A0B4J266 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV41A0A0B4J266 RBM17P2-201ENST00000616397 1405 ntBASIC16.36■□□□□ 0.21
TRAV41A0A0B4J266 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC16.36■□□□□ 0.21
TRAV41A0A0B4J266 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
TRAV41A0A0B4J266 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV41A0A0B4J266 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV41A0A0B4J266 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC16.36■□□□□ 0.21
TRAV41A0A0B4J266 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV41A0A0B4J266 PALM-207ENST00000590161 2137 ntTSL 4 BASIC16.36■□□□□ 0.21
TRAV41A0A0B4J266 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC16.36■□□□□ 0.21
TRAV41A0A0B4J266 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
TRAV41A0A0B4J266 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV41A0A0B4J266 METTL26-203ENST00000397664 604 ntTSL 2 BASIC16.36■□□□□ 0.21
TRAV41A0A0B4J266 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC16.36■□□□□ 0.21
TRAV41A0A0B4J266 TERF1P5-201ENST00000477545 1207 ntBASIC16.36■□□□□ 0.21
TRAV41A0A0B4J266 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC16.36■□□□□ 0.21
TRAV41A0A0B4J266 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV41A0A0B4J266 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV41A0A0B4J266 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC16.36■□□□□ 0.21
TRAV41A0A0B4J266 AC080038.1-201ENST00000611274 1154 ntBASIC16.36■□□□□ 0.21
TRAV41A0A0B4J266 AC243732.1-201ENST00000612648 864 ntBASIC16.36■□□□□ 0.21
TRAV41A0A0B4J266 MDK-213ENST00000617138 635 ntTSL 2 BASIC16.36■□□□□ 0.21
TRAV41A0A0B4J266 AL024507.2-201ENST00000606070 2574 ntBASIC16.36■□□□□ 0.21
TRAV41A0A0B4J266 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV41A0A0B4J266 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV41A0A0B4J266 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC16.36■□□□□ 0.21
TRAV41A0A0B4J266 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC16.36■□□□□ 0.21
TRAV41A0A0B4J266 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV41A0A0B4J266 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV41A0A0B4J266 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV41A0A0B4J266 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV41A0A0B4J266 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC16.35■□□□□ 0.21
TRAV41A0A0B4J266 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV41A0A0B4J266 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV41A0A0B4J266 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
TRAV41A0A0B4J266 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
TRAV41A0A0B4J266 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC16.35■□□□□ 0.21
TRAV41A0A0B4J266 DLX3-202ENST00000512495 834 ntTSL 2 BASIC16.35■□□□□ 0.21
TRAV41A0A0B4J266 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC16.35■□□□□ 0.21
TRAV41A0A0B4J266 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV41A0A0B4J266 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV41A0A0B4J266 AC013268.1-206ENST00000638368 961 ntBASIC16.35■□□□□ 0.21
TRAV41A0A0B4J266 AC112229.1-201ENST00000639295 961 ntBASIC16.35■□□□□ 0.21
TRAV41A0A0B4J266 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
TRAV41A0A0B4J266 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC16.35■□□□□ 0.21
TRAV41A0A0B4J266 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
TRAV41A0A0B4J266 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV41A0A0B4J266 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV41A0A0B4J266 FEM1AP4-201ENST00000443167 1987 ntBASIC16.35■□□□□ 0.21
TRAV41A0A0B4J266 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV41A0A0B4J266 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
TRAV41A0A0B4J266 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV41A0A0B4J266 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC16.34■□□□□ 0.21
TRAV41A0A0B4J266 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV41A0A0B4J266 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
TRAV41A0A0B4J266 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV41A0A0B4J266 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV41A0A0B4J266 AC026310.3-201ENST00000625186 2373 ntBASIC16.34■□□□□ 0.21
TRAV41A0A0B4J266 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms