Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.24■□□□□ 0.83
CCDC28BQ9BUN5 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.24■□□□□ 0.83
CCDC28BQ9BUN5 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC28BQ9BUN5 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.24■□□□□ 0.83
CCDC28BQ9BUN5 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC28BQ9BUN5 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.24■□□□□ 0.83
CCDC28BQ9BUN5 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC28BQ9BUN5 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC28BQ9BUN5 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC28BQ9BUN5 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC28BQ9BUN5 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.23■□□□□ 0.83
CCDC28BQ9BUN5 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC28BQ9BUN5 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
CCDC28BQ9BUN5 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC28BQ9BUN5 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
CCDC28BQ9BUN5 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC28BQ9BUN5 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.23■□□□□ 0.83
CCDC28BQ9BUN5 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC28BQ9BUN5 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.23■□□□□ 0.83
CCDC28BQ9BUN5 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC28BQ9BUN5 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC28BQ9BUN5 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC20.23■□□□□ 0.83
CCDC28BQ9BUN5 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.23■□□□□ 0.83
CCDC28BQ9BUN5 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC28BQ9BUN5 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.23■□□□□ 0.83
CCDC28BQ9BUN5 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC28BQ9BUN5 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC28BQ9BUN5 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC28BQ9BUN5 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.23■□□□□ 0.83
CCDC28BQ9BUN5 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC28BQ9BUN5 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.23■□□□□ 0.83
CCDC28BQ9BUN5 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.23■□□□□ 0.83
CCDC28BQ9BUN5 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.22■□□□□ 0.83
CCDC28BQ9BUN5 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CCDC28BQ9BUN5 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
CCDC28BQ9BUN5 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC28BQ9BUN5 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.22■□□□□ 0.83
CCDC28BQ9BUN5 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC28BQ9BUN5 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC28BQ9BUN5 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
CCDC28BQ9BUN5 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC28BQ9BUN5 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.22■□□□□ 0.83
CCDC28BQ9BUN5 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC28BQ9BUN5 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CCDC28BQ9BUN5 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC28BQ9BUN5 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.22■□□□□ 0.83
CCDC28BQ9BUN5 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
CCDC28BQ9BUN5 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC20.22■□□□□ 0.83
CCDC28BQ9BUN5 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.22■□□□□ 0.83
CCDC28BQ9BUN5 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC28BQ9BUN5 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC28BQ9BUN5 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC28BQ9BUN5 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC28BQ9BUN5 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.22■□□□□ 0.83
CCDC28BQ9BUN5 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.22■□□□□ 0.83
CCDC28BQ9BUN5 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC28BQ9BUN5 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC28BQ9BUN5 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC28BQ9BUN5 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC28BQ9BUN5 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC28BQ9BUN5 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
CCDC28BQ9BUN5 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC28BQ9BUN5 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC28BQ9BUN5 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC28BQ9BUN5 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC28BQ9BUN5 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC28BQ9BUN5 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.21■□□□□ 0.83
CCDC28BQ9BUN5 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC28BQ9BUN5 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC28BQ9BUN5 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC28BQ9BUN5 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC28BQ9BUN5 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
CCDC28BQ9BUN5 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
CCDC28BQ9BUN5 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC28BQ9BUN5 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC28BQ9BUN5 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC28BQ9BUN5 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC28BQ9BUN5 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC28BQ9BUN5 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.2■□□□□ 0.82
CCDC28BQ9BUN5 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC28BQ9BUN5 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.2■□□□□ 0.82
CCDC28BQ9BUN5 SERBP1P1-201ENST00000396021 1160 ntBASIC20.2■□□□□ 0.82
CCDC28BQ9BUN5 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC20.2■□□□□ 0.82
CCDC28BQ9BUN5 SLC47A1P1-202ENST00000449666 945 ntBASIC20.2■□□□□ 0.82
CCDC28BQ9BUN5 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.2■□□□□ 0.82
CCDC28BQ9BUN5 AC136469.2-201ENST00000623944 1028 ntBASIC20.2■□□□□ 0.82
CCDC28BQ9BUN5 BX323043.1-201ENST00000641006 1765 ntBASIC20.2■□□□□ 0.82
CCDC28BQ9BUN5 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC28BQ9BUN5 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.2■□□□□ 0.82
CCDC28BQ9BUN5 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.2■□□□□ 0.82
CCDC28BQ9BUN5 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC28BQ9BUN5 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC28BQ9BUN5 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.19■□□□□ 0.82
CCDC28BQ9BUN5 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC28BQ9BUN5 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC28BQ9BUN5 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC28BQ9BUN5 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC28BQ9BUN5 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.19■□□□□ 0.82
CCDC28BQ9BUN5 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.19■□□□□ 0.82
CCDC28BQ9BUN5 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms