Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
COL12A1Q99715 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL12A1Q99715 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL12A1Q99715 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.43■□□□□ 0.54
COL12A1Q99715 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL12A1Q99715 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC18.43■□□□□ 0.54
COL12A1Q99715 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL12A1Q99715 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC18.43■□□□□ 0.54
COL12A1Q99715 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC18.43■□□□□ 0.54
COL12A1Q99715 DUSP5P1-201ENST00000441325 1139 ntBASIC18.43■□□□□ 0.54
COL12A1Q99715 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
COL12A1Q99715 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.43■□□□□ 0.54
COL12A1Q99715 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC18.43■□□□□ 0.54
COL12A1Q99715 DECR2-212ENST00000627716 352 ntTSL 2 BASIC18.43■□□□□ 0.54
COL12A1Q99715 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL12A1Q99715 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC18.43■□□□□ 0.54
COL12A1Q99715 TERF1P1-201ENST00000311003 1181 ntBASIC18.43■□□□□ 0.54
COL12A1Q99715 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.43■□□□□ 0.54
COL12A1Q99715 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL12A1Q99715 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL12A1Q99715 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL12A1Q99715 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC18.43■□□□□ 0.54
COL12A1Q99715 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL12A1Q99715 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL12A1Q99715 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL12A1Q99715 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
COL12A1Q99715 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC18.42■□□□□ 0.54
COL12A1Q99715 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL12A1Q99715 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL12A1Q99715 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL12A1Q99715 SERF2-207ENST00000409614 582 ntTSL 2 BASIC18.42■□□□□ 0.54
COL12A1Q99715 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL12A1Q99715 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.42■□□□□ 0.54
COL12A1Q99715 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.42■□□□□ 0.54
COL12A1Q99715 AC133681.1-201ENST00000465482 601 ntBASIC18.42■□□□□ 0.54
COL12A1Q99715 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC18.42■□□□□ 0.54
COL12A1Q99715 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
COL12A1Q99715 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL12A1Q99715 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC18.42■□□□□ 0.54
COL12A1Q99715 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC18.42■□□□□ 0.54
COL12A1Q99715 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC18.42■□□□□ 0.54
COL12A1Q99715 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL12A1Q99715 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC18.42■□□□□ 0.54
COL12A1Q99715 OR7E47P-201ENST00000546390 1422 ntBASIC18.42■□□□□ 0.54
COL12A1Q99715 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL12A1Q99715 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL12A1Q99715 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL12A1Q99715 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
COL12A1Q99715 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL12A1Q99715 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL12A1Q99715 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL12A1Q99715 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.41■□□□□ 0.54
COL12A1Q99715 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC18.41■□□□□ 0.54
COL12A1Q99715 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC18.41■□□□□ 0.54
COL12A1Q99715 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC18.41■□□□□ 0.54
COL12A1Q99715 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL12A1Q99715 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
COL12A1Q99715 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL12A1Q99715 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL12A1Q99715 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC18.41■□□□□ 0.54
COL12A1Q99715 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC18.41■□□□□ 0.54
COL12A1Q99715 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC18.41■□□□□ 0.54
COL12A1Q99715 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC18.41■□□□□ 0.54
COL12A1Q99715 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL12A1Q99715 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC18.41■□□□□ 0.54
COL12A1Q99715 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC18.41■□□□□ 0.54
COL12A1Q99715 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC18.41■□□□□ 0.54
COL12A1Q99715 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL12A1Q99715 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL12A1Q99715 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL12A1Q99715 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL12A1Q99715 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL12A1Q99715 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.4■□□□□ 0.54
COL12A1Q99715 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL12A1Q99715 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
COL12A1Q99715 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL12A1Q99715 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL12A1Q99715 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL12A1Q99715 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
COL12A1Q99715 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC18.4■□□□□ 0.54
COL12A1Q99715 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC18.4■□□□□ 0.54
COL12A1Q99715 RARRES2P10-201ENST00000564312 460 ntBASIC18.4■□□□□ 0.54
COL12A1Q99715 AC087388.1-201ENST00000571370 1112 ntBASIC18.4■□□□□ 0.54
COL12A1Q99715 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL12A1Q99715 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
COL12A1Q99715 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.54
COL12A1Q99715 KRT18P22-201ENST00000402024 1347 ntBASIC18.39■□□□□ 0.54
COL12A1Q99715 KRT18P56-201ENST00000507275 550 ntBASIC18.39■□□□□ 0.54
COL12A1Q99715 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
COL12A1Q99715 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.39■□□□□ 0.54
COL12A1Q99715 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.54
COL12A1Q99715 AC100791.3-201ENST00000617619 330 ntBASIC18.39■□□□□ 0.54
COL12A1Q99715 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL12A1Q99715 RARG-204ENST00000543726 1779 ntTSL 2 BASIC18.39■□□□□ 0.53
COL12A1Q99715 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
COL12A1Q99715 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL12A1Q99715 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC18.39■□□□□ 0.53
COL12A1Q99715 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC18.39■□□□□ 0.53
COL12A1Q99715 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
COL12A1Q99715 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms