Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.84■□□□□ 0.93
VPS13AQ96RL7 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.84■□□□□ 0.93
VPS13AQ96RL7 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS13AQ96RL7 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
VPS13AQ96RL7 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
VPS13AQ96RL7 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VPS13AQ96RL7 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
VPS13AQ96RL7 AC239809.2-201ENST00000415381 517 ntBASIC20.83■□□□□ 0.93
VPS13AQ96RL7 GRAP-204ENST00000573099 846 ntTSL 3 BASIC20.83■□□□□ 0.93
VPS13AQ96RL7 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.83■□□□□ 0.93
VPS13AQ96RL7 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
VPS13AQ96RL7 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
VPS13AQ96RL7 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC20.83■□□□□ 0.93
VPS13AQ96RL7 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
VPS13AQ96RL7 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC20.83■□□□□ 0.93
VPS13AQ96RL7 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VPS13AQ96RL7 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC20.83■□□□□ 0.93
VPS13AQ96RL7 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
VPS13AQ96RL7 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
VPS13AQ96RL7 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC20.83■□□□□ 0.92
VPS13AQ96RL7 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC20.83■□□□□ 0.92
VPS13AQ96RL7 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC20.83■□□□□ 0.92
VPS13AQ96RL7 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.82■□□□□ 0.92
VPS13AQ96RL7 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VPS13AQ96RL7 SERF2-207ENST00000409614 582 ntTSL 2 BASIC20.82■□□□□ 0.92
VPS13AQ96RL7 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VPS13AQ96RL7 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS13AQ96RL7 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC20.82■□□□□ 0.92
VPS13AQ96RL7 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.82■□□□□ 0.92
VPS13AQ96RL7 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC20.82■□□□□ 0.92
VPS13AQ96RL7 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VPS13AQ96RL7 AC003102.1-202ENST00000563394 1796 ntBASIC20.82■□□□□ 0.92
VPS13AQ96RL7 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS13AQ96RL7 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC20.82■□□□□ 0.92
VPS13AQ96RL7 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC20.82■□□□□ 0.92
VPS13AQ96RL7 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS13AQ96RL7 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VPS13AQ96RL7 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.82■□□□□ 0.92
VPS13AQ96RL7 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.82■□□□□ 0.92
VPS13AQ96RL7 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS13AQ96RL7 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS13AQ96RL7 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.81■□□□□ 0.92
VPS13AQ96RL7 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
VPS13AQ96RL7 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC20.81■□□□□ 0.92
VPS13AQ96RL7 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS13AQ96RL7 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC20.81■□□□□ 0.92
VPS13AQ96RL7 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS13AQ96RL7 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC20.81■□□□□ 0.92
VPS13AQ96RL7 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS13AQ96RL7 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC20.81■□□□□ 0.92
VPS13AQ96RL7 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VPS13AQ96RL7 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS13AQ96RL7 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS13AQ96RL7 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC20.81■□□□□ 0.92
VPS13AQ96RL7 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC20.81■□□□□ 0.92
VPS13AQ96RL7 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VPS13AQ96RL7 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS13AQ96RL7 AC113347.1-201ENST00000413321 391 ntBASIC20.81■□□□□ 0.92
VPS13AQ96RL7 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.81■□□□□ 0.92
VPS13AQ96RL7 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC20.81■□□□□ 0.92
VPS13AQ96RL7 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
VPS13AQ96RL7 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.81■□□□□ 0.92
VPS13AQ96RL7 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.81■□□□□ 0.92
VPS13AQ96RL7 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC20.81■□□□□ 0.92
VPS13AQ96RL7 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS13AQ96RL7 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.81■□□□□ 0.92
VPS13AQ96RL7 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VPS13AQ96RL7 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
VPS13AQ96RL7 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC20.8■□□□□ 0.92
VPS13AQ96RL7 AL589743.5-201ENST00000616611 1050 ntBASIC20.8■□□□□ 0.92
VPS13AQ96RL7 AL590326.2-201ENST00000625139 305 ntBASIC20.8■□□□□ 0.92
VPS13AQ96RL7 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VPS13AQ96RL7 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
VPS13AQ96RL7 AC133681.1-201ENST00000465482 601 ntBASIC20.8■□□□□ 0.92
VPS13AQ96RL7 RNF146-204ENST00000476956 884 ntTSL 2 BASIC20.8■□□□□ 0.92
VPS13AQ96RL7 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VPS13AQ96RL7 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VPS13AQ96RL7 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS13AQ96RL7 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
VPS13AQ96RL7 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC20.79■□□□□ 0.92
VPS13AQ96RL7 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.79■□□□□ 0.92
VPS13AQ96RL7 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
VPS13AQ96RL7 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
VPS13AQ96RL7 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS13AQ96RL7 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
VPS13AQ96RL7 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC20.79■□□□□ 0.92
VPS13AQ96RL7 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
VPS13AQ96RL7 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS13AQ96RL7 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS13AQ96RL7 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS13AQ96RL7 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.79■□□□□ 0.92
VPS13AQ96RL7 KRT18P57-201ENST00000443599 1254 ntBASIC20.79■□□□□ 0.92
VPS13AQ96RL7 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC20.79■□□□□ 0.92
VPS13AQ96RL7 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC20.79■□□□□ 0.92
VPS13AQ96RL7 RMI2-205ENST00000576027 818 ntTSL 2 BASIC20.79■□□□□ 0.92
VPS13AQ96RL7 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VPS13AQ96RL7 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS13AQ96RL7 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VPS13AQ96RL7 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VPS13AQ96RL7 PENK-204ENST00000518770 863 ntTSL 2 BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms