Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ZNF540Q8NDQ6 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
ZNF540Q8NDQ6 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ZNF540Q8NDQ6 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.22■□□□□ 0.67
ZNF540Q8NDQ6 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC19.22■□□□□ 0.67
ZNF540Q8NDQ6 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ZNF540Q8NDQ6 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
ZNF540Q8NDQ6 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
ZNF540Q8NDQ6 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.22■□□□□ 0.67
ZNF540Q8NDQ6 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
ZNF540Q8NDQ6 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ZNF540Q8NDQ6 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
ZNF540Q8NDQ6 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
ZNF540Q8NDQ6 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.22■□□□□ 0.67
ZNF540Q8NDQ6 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.22■□□□□ 0.67
ZNF540Q8NDQ6 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.21■□□□□ 0.67
ZNF540Q8NDQ6 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.21■□□□□ 0.67
ZNF540Q8NDQ6 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ZNF540Q8NDQ6 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC19.21■□□□□ 0.67
ZNF540Q8NDQ6 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
ZNF540Q8NDQ6 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ZNF540Q8NDQ6 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
ZNF540Q8NDQ6 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ZNF540Q8NDQ6 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ZNF540Q8NDQ6 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ZNF540Q8NDQ6 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC19.21■□□□□ 0.67
ZNF540Q8NDQ6 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC19.21■□□□□ 0.67
ZNF540Q8NDQ6 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ZNF540Q8NDQ6 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC19.21■□□□□ 0.67
ZNF540Q8NDQ6 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
ZNF540Q8NDQ6 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC19.21■□□□□ 0.67
ZNF540Q8NDQ6 SYT6-210ENST00000641643 1587 ntBASIC19.21■□□□□ 0.67
ZNF540Q8NDQ6 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
ZNF540Q8NDQ6 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ZNF540Q8NDQ6 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ZNF540Q8NDQ6 USP45-205ENST00000472914 1617 ntTSL 5 BASIC19.21■□□□□ 0.67
ZNF540Q8NDQ6 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.21■□□□□ 0.67
ZNF540Q8NDQ6 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ZNF540Q8NDQ6 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ZNF540Q8NDQ6 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
ZNF540Q8NDQ6 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.2■□□□□ 0.66
ZNF540Q8NDQ6 EI24-211ENST00000534546 1544 ntTSL 2 BASIC19.2■□□□□ 0.66
ZNF540Q8NDQ6 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
ZNF540Q8NDQ6 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.2■□□□□ 0.66
ZNF540Q8NDQ6 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC19.2■□□□□ 0.66
ZNF540Q8NDQ6 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF540Q8NDQ6 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF540Q8NDQ6 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.2■□□□□ 0.66
ZNF540Q8NDQ6 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF540Q8NDQ6 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF540Q8NDQ6 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF540Q8NDQ6 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF540Q8NDQ6 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.2■□□□□ 0.66
ZNF540Q8NDQ6 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF540Q8NDQ6 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF540Q8NDQ6 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC19.2■□□□□ 0.66
ZNF540Q8NDQ6 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF540Q8NDQ6 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF540Q8NDQ6 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF540Q8NDQ6 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF540Q8NDQ6 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF540Q8NDQ6 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF540Q8NDQ6 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.2■□□□□ 0.66
ZNF540Q8NDQ6 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
ZNF540Q8NDQ6 AC006128.1-201ENST00000624704 1661 ntBASIC19.2■□□□□ 0.66
ZNF540Q8NDQ6 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF540Q8NDQ6 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.2■□□□□ 0.66
ZNF540Q8NDQ6 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF540Q8NDQ6 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF540Q8NDQ6 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.2■□□□□ 0.66
ZNF540Q8NDQ6 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ZNF540Q8NDQ6 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ZNF540Q8NDQ6 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ZNF540Q8NDQ6 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ZNF540Q8NDQ6 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
ZNF540Q8NDQ6 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ZNF540Q8NDQ6 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ZNF540Q8NDQ6 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
ZNF540Q8NDQ6 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
ZNF540Q8NDQ6 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ZNF540Q8NDQ6 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC19.19■□□□□ 0.66
ZNF540Q8NDQ6 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ZNF540Q8NDQ6 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC19.19■□□□□ 0.66
ZNF540Q8NDQ6 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ZNF540Q8NDQ6 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ZNF540Q8NDQ6 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ZNF540Q8NDQ6 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.19■□□□□ 0.66
ZNF540Q8NDQ6 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
ZNF540Q8NDQ6 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.19■□□□□ 0.66
ZNF540Q8NDQ6 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ZNF540Q8NDQ6 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ZNF540Q8NDQ6 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
ZNF540Q8NDQ6 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.18■□□□□ 0.66
ZNF540Q8NDQ6 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF540Q8NDQ6 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
ZNF540Q8NDQ6 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF540Q8NDQ6 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF540Q8NDQ6 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF540Q8NDQ6 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF540Q8NDQ6 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms