Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
C9orf40Q8IXQ3 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.31■□□□□ 0.68
C9orf40Q8IXQ3 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
C9orf40Q8IXQ3 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
C9orf40Q8IXQ3 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.31■□□□□ 0.68
C9orf40Q8IXQ3 AL024507.2-201ENST00000606070 2574 ntBASIC19.31■□□□□ 0.68
C9orf40Q8IXQ3 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
C9orf40Q8IXQ3 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
C9orf40Q8IXQ3 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
C9orf40Q8IXQ3 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
C9orf40Q8IXQ3 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC19.31■□□□□ 0.68
C9orf40Q8IXQ3 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
C9orf40Q8IXQ3 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC19.31■□□□□ 0.68
C9orf40Q8IXQ3 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
C9orf40Q8IXQ3 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.31■□□□□ 0.68
C9orf40Q8IXQ3 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
C9orf40Q8IXQ3 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
C9orf40Q8IXQ3 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
C9orf40Q8IXQ3 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.3■□□□□ 0.68
C9orf40Q8IXQ3 AC007322.1-201ENST00000426983 750 ntBASIC19.3■□□□□ 0.68
C9orf40Q8IXQ3 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
C9orf40Q8IXQ3 AC007322.4-201ENST00000509611 723 ntBASIC19.3■□□□□ 0.68
C9orf40Q8IXQ3 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
C9orf40Q8IXQ3 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
C9orf40Q8IXQ3 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
C9orf40Q8IXQ3 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
C9orf40Q8IXQ3 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
C9orf40Q8IXQ3 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
C9orf40Q8IXQ3 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
C9orf40Q8IXQ3 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
C9orf40Q8IXQ3 CROCCP5-201ENST00000436658 830 ntBASIC19.29■□□□□ 0.68
C9orf40Q8IXQ3 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.29■□□□□ 0.68
C9orf40Q8IXQ3 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.29■□□□□ 0.68
C9orf40Q8IXQ3 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC19.29■□□□□ 0.68
C9orf40Q8IXQ3 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.29■□□□□ 0.68
C9orf40Q8IXQ3 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC19.29■□□□□ 0.68
C9orf40Q8IXQ3 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC19.29■□□□□ 0.68
C9orf40Q8IXQ3 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.29■□□□□ 0.68
C9orf40Q8IXQ3 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
C9orf40Q8IXQ3 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
C9orf40Q8IXQ3 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
C9orf40Q8IXQ3 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
C9orf40Q8IXQ3 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
C9orf40Q8IXQ3 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
C9orf40Q8IXQ3 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
C9orf40Q8IXQ3 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.28■□□□□ 0.68
C9orf40Q8IXQ3 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
C9orf40Q8IXQ3 AC026310.3-201ENST00000625186 2373 ntBASIC19.28■□□□□ 0.68
C9orf40Q8IXQ3 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
C9orf40Q8IXQ3 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
C9orf40Q8IXQ3 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
C9orf40Q8IXQ3 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
C9orf40Q8IXQ3 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
C9orf40Q8IXQ3 MIR663A-201ENST00000385250 93 ntBASIC19.28■□□□□ 0.68
C9orf40Q8IXQ3 AC091799.1-201ENST00000422823 811 ntBASIC19.28■□□□□ 0.68
C9orf40Q8IXQ3 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.28■□□□□ 0.68
C9orf40Q8IXQ3 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC19.28■□□□□ 0.68
C9orf40Q8IXQ3 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.28■□□□□ 0.68
C9orf40Q8IXQ3 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
C9orf40Q8IXQ3 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
C9orf40Q8IXQ3 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
C9orf40Q8IXQ3 FEM1AP4-201ENST00000443167 1987 ntBASIC19.28■□□□□ 0.68
C9orf40Q8IXQ3 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
C9orf40Q8IXQ3 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.27■□□□□ 0.68
C9orf40Q8IXQ3 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
C9orf40Q8IXQ3 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
C9orf40Q8IXQ3 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
C9orf40Q8IXQ3 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.27■□□□□ 0.68
C9orf40Q8IXQ3 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
C9orf40Q8IXQ3 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
C9orf40Q8IXQ3 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
C9orf40Q8IXQ3 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
C9orf40Q8IXQ3 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.27■□□□□ 0.68
C9orf40Q8IXQ3 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
C9orf40Q8IXQ3 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC19.27■□□□□ 0.68
C9orf40Q8IXQ3 AC005181.1-201ENST00000604782 1256 ntBASIC19.27■□□□□ 0.68
C9orf40Q8IXQ3 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
C9orf40Q8IXQ3 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
C9orf40Q8IXQ3 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
C9orf40Q8IXQ3 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
C9orf40Q8IXQ3 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
C9orf40Q8IXQ3 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
C9orf40Q8IXQ3 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.27■□□□□ 0.67
C9orf40Q8IXQ3 AC068338.2-201ENST00000563278 1430 ntBASIC19.26■□□□□ 0.67
C9orf40Q8IXQ3 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
C9orf40Q8IXQ3 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
C9orf40Q8IXQ3 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC19.26■□□□□ 0.67
C9orf40Q8IXQ3 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC19.26■□□□□ 0.67
C9orf40Q8IXQ3 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.26■□□□□ 0.67
C9orf40Q8IXQ3 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
C9orf40Q8IXQ3 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC19.26■□□□□ 0.67
C9orf40Q8IXQ3 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
C9orf40Q8IXQ3 AL050303.2-201ENST00000619798 666 ntBASIC19.26■□□□□ 0.67
C9orf40Q8IXQ3 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
C9orf40Q8IXQ3 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
C9orf40Q8IXQ3 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
C9orf40Q8IXQ3 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
C9orf40Q8IXQ3 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.25■□□□□ 0.67
C9orf40Q8IXQ3 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
C9orf40Q8IXQ3 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms