Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC17.53■□□□□ 0.4
VPS13CQ709C8 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC17.53■□□□□ 0.4
VPS13CQ709C8 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS13CQ709C8 CASK-201ENST00000378154 2494 ntTSL 5 BASIC17.52■□□□□ 0.4
VPS13CQ709C8 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS13CQ709C8 C11orf96-202ENST00000528572 1834 ntBASIC17.52■□□□□ 0.4
VPS13CQ709C8 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS13CQ709C8 TSPY7P-201ENST00000431358 1114 ntBASIC17.52■□□□□ 0.4
VPS13CQ709C8 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC17.52■□□□□ 0.4
VPS13CQ709C8 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS13CQ709C8 NME6-213ENST00000451657 871 ntTSL 2 BASIC17.52■□□□□ 0.4
VPS13CQ709C8 C1orf229-201ENST00000623686 2258 ntBASIC17.52■□□□□ 0.4
VPS13CQ709C8 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS13CQ709C8 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC17.52■□□□□ 0.4
VPS13CQ709C8 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VPS13CQ709C8 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
VPS13CQ709C8 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC17.52■□□□□ 0.4
VPS13CQ709C8 SNX21-213ENST00000614929 587 ntTSL 5 BASIC17.52■□□□□ 0.4
VPS13CQ709C8 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC17.52■□□□□ 0.39
VPS13CQ709C8 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC17.52■□□□□ 0.39
VPS13CQ709C8 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
VPS13CQ709C8 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC17.52■□□□□ 0.39
VPS13CQ709C8 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
VPS13CQ709C8 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC17.52■□□□□ 0.39
VPS13CQ709C8 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VPS13CQ709C8 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS13CQ709C8 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS13CQ709C8 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC17.51■□□□□ 0.39
VPS13CQ709C8 AC100791.3-201ENST00000617619 330 ntBASIC17.51■□□□□ 0.39
VPS13CQ709C8 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VPS13CQ709C8 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC17.51■□□□□ 0.39
VPS13CQ709C8 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
VPS13CQ709C8 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
VPS13CQ709C8 AC060766.5-201ENST00000590539 871 ntBASIC17.51■□□□□ 0.39
VPS13CQ709C8 AC145285.6-201ENST00000604632 637 ntBASIC17.51■□□□□ 0.39
VPS13CQ709C8 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS13CQ709C8 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
VPS13CQ709C8 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC17.51■□□□□ 0.39
VPS13CQ709C8 RN7SL471P-201ENST00000580476 299 ntBASIC17.51■□□□□ 0.39
VPS13CQ709C8 AC233702.5-201ENST00000584107 538 ntBASIC17.51■□□□□ 0.39
VPS13CQ709C8 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC17.51■□□□□ 0.39
VPS13CQ709C8 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VPS13CQ709C8 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC17.51■□□□□ 0.39
VPS13CQ709C8 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VPS13CQ709C8 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC17.5■□□□□ 0.39
VPS13CQ709C8 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC17.5■□□□□ 0.39
VPS13CQ709C8 AL034346.1-201ENST00000568244 1277 ntBASIC17.5■□□□□ 0.39
VPS13CQ709C8 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VPS13CQ709C8 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VPS13CQ709C8 ME2-206ENST00000638410 2289 ntTSL 5 BASIC17.5■□□□□ 0.39
VPS13CQ709C8 ME2-210ENST00000639255 2262 ntTSL 5 BASIC17.5■□□□□ 0.39
VPS13CQ709C8 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VPS13CQ709C8 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC17.5■□□□□ 0.39
VPS13CQ709C8 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC17.5■□□□□ 0.39
VPS13CQ709C8 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.5■□□□□ 0.39
VPS13CQ709C8 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VPS13CQ709C8 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS13CQ709C8 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC17.5■□□□□ 0.39
VPS13CQ709C8 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC17.5■□□□□ 0.39
VPS13CQ709C8 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VPS13CQ709C8 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS13CQ709C8 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VPS13CQ709C8 GCA-201ENST00000233612 1694 ntTSL 2 BASIC17.49■□□□□ 0.39
VPS13CQ709C8 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VPS13CQ709C8 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VPS13CQ709C8 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VPS13CQ709C8 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC17.49■□□□□ 0.39
VPS13CQ709C8 LSM12P1-201ENST00000411836 588 ntBASIC17.49■□□□□ 0.39
VPS13CQ709C8 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.49■□□□□ 0.39
VPS13CQ709C8 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS13CQ709C8 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC17.49■□□□□ 0.39
VPS13CQ709C8 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
VPS13CQ709C8 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS13CQ709C8 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC17.49■□□□□ 0.39
VPS13CQ709C8 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC17.49■□□□□ 0.39
VPS13CQ709C8 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS13CQ709C8 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS13CQ709C8 AC012618.2-201ENST00000428058 849 ntBASIC17.49■□□□□ 0.39
VPS13CQ709C8 AL355075.4-201ENST00000554988 638 ntBASIC17.49■□□□□ 0.39
VPS13CQ709C8 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VPS13CQ709C8 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS13CQ709C8 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS13CQ709C8 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS13CQ709C8 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC17.48■□□□□ 0.39
VPS13CQ709C8 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS13CQ709C8 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS13CQ709C8 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC17.48■□□□□ 0.39
VPS13CQ709C8 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC17.48■□□□□ 0.39
VPS13CQ709C8 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS13CQ709C8 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS13CQ709C8 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC17.48■□□□□ 0.39
VPS13CQ709C8 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS13CQ709C8 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS13CQ709C8 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS13CQ709C8 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS13CQ709C8 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS13CQ709C8 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS13CQ709C8 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
VPS13CQ709C8 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
VPS13CQ709C8 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms