Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
TRIM40Q6P9F5 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.99■□□□□ 0.79
TRIM40Q6P9F5 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRIM40Q6P9F5 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRIM40Q6P9F5 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
TRIM40Q6P9F5 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRIM40Q6P9F5 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.98■□□□□ 0.79
TRIM40Q6P9F5 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
TRIM40Q6P9F5 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRIM40Q6P9F5 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC19.98■□□□□ 0.79
TRIM40Q6P9F5 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRIM40Q6P9F5 MIR935-201ENST00000401179 91 ntBASIC19.98■□□□□ 0.79
TRIM40Q6P9F5 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
TRIM40Q6P9F5 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC19.98■□□□□ 0.79
TRIM40Q6P9F5 AP001160.3-201ENST00000601484 763 ntBASIC19.98■□□□□ 0.79
TRIM40Q6P9F5 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
TRIM40Q6P9F5 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRIM40Q6P9F5 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRIM40Q6P9F5 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRIM40Q6P9F5 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRIM40Q6P9F5 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRIM40Q6P9F5 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRIM40Q6P9F5 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRIM40Q6P9F5 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRIM40Q6P9F5 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
TRIM40Q6P9F5 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TRIM40Q6P9F5 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
TRIM40Q6P9F5 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.97■□□□□ 0.79
TRIM40Q6P9F5 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC19.97■□□□□ 0.79
TRIM40Q6P9F5 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRIM40Q6P9F5 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.97■□□□□ 0.79
TRIM40Q6P9F5 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
TRIM40Q6P9F5 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
TRIM40Q6P9F5 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRIM40Q6P9F5 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.97■□□□□ 0.79
TRIM40Q6P9F5 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.97■□□□□ 0.79
TRIM40Q6P9F5 AF106564.1-201ENST00000607058 2553 ntBASIC19.96■□□□□ 0.79
TRIM40Q6P9F5 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM40Q6P9F5 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.96■□□□□ 0.79
TRIM40Q6P9F5 AC061975.6-201ENST00000579045 1553 ntBASIC19.96■□□□□ 0.79
TRIM40Q6P9F5 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.96■□□□□ 0.79
TRIM40Q6P9F5 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
TRIM40Q6P9F5 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
TRIM40Q6P9F5 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM40Q6P9F5 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.96■□□□□ 0.79
TRIM40Q6P9F5 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM40Q6P9F5 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM40Q6P9F5 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC19.96■□□□□ 0.79
TRIM40Q6P9F5 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.96■□□□□ 0.79
TRIM40Q6P9F5 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM40Q6P9F5 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC19.96■□□□□ 0.79
TRIM40Q6P9F5 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM40Q6P9F5 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM40Q6P9F5 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM40Q6P9F5 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM40Q6P9F5 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM40Q6P9F5 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM40Q6P9F5 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM40Q6P9F5 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM40Q6P9F5 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM40Q6P9F5 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM40Q6P9F5 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC19.95■□□□□ 0.78
TRIM40Q6P9F5 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM40Q6P9F5 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM40Q6P9F5 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.95■□□□□ 0.78
TRIM40Q6P9F5 ANKRD20A6P-201ENST00000618763 204 ntBASIC19.95■□□□□ 0.78
TRIM40Q6P9F5 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM40Q6P9F5 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.95■□□□□ 0.78
TRIM40Q6P9F5 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.95■□□□□ 0.78
TRIM40Q6P9F5 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM40Q6P9F5 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM40Q6P9F5 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM40Q6P9F5 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM40Q6P9F5 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM40Q6P9F5 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.94■□□□□ 0.78
TRIM40Q6P9F5 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM40Q6P9F5 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM40Q6P9F5 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM40Q6P9F5 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
TRIM40Q6P9F5 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM40Q6P9F5 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC19.94■□□□□ 0.78
TRIM40Q6P9F5 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.94■□□□□ 0.78
TRIM40Q6P9F5 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM40Q6P9F5 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM40Q6P9F5 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM40Q6P9F5 KRT18P5-201ENST00000436075 1291 ntBASIC19.94■□□□□ 0.78
TRIM40Q6P9F5 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.94■□□□□ 0.78
TRIM40Q6P9F5 KRT18P20-201ENST00000548986 1279 ntBASIC19.94■□□□□ 0.78
TRIM40Q6P9F5 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC19.94■□□□□ 0.78
TRIM40Q6P9F5 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM40Q6P9F5 AL024507.2-201ENST00000606070 2574 ntBASIC19.94■□□□□ 0.78
TRIM40Q6P9F5 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM40Q6P9F5 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM40Q6P9F5 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
TRIM40Q6P9F5 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
TRIM40Q6P9F5 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM40Q6P9F5 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM40Q6P9F5 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM40Q6P9F5 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM40Q6P9F5 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms