Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
HSPG2P98160 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HSPG2P98160 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HSPG2P98160 AC061975.6-201ENST00000579045 1553 ntBASIC13.12□□□□□ -0.31
HSPG2P98160 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HSPG2P98160 LINC00526-201ENST00000581067 1875 ntBASIC13.12□□□□□ -0.31
HSPG2P98160 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HSPG2P98160 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC13.12□□□□□ -0.31
HSPG2P98160 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC13.12□□□□□ -0.31
HSPG2P98160 PBX1-209ENST00000485769 834 ntTSL 2 BASIC13.12□□□□□ -0.31
HSPG2P98160 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC13.12□□□□□ -0.31
HSPG2P98160 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
HSPG2P98160 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
HSPG2P98160 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
HSPG2P98160 METTL23-204ENST00000586752 904 ntTSL 2 BASIC13.12□□□□□ -0.31
HSPG2P98160 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC13.12□□□□□ -0.31
HSPG2P98160 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC13.12□□□□□ -0.31
HSPG2P98160 AC145676.1-201ENST00000514988 2004 ntBASIC13.12□□□□□ -0.31
HSPG2P98160 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
HSPG2P98160 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HSPG2P98160 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HSPG2P98160 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HSPG2P98160 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
HSPG2P98160 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
HSPG2P98160 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HSPG2P98160 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
HSPG2P98160 AC243732.1-201ENST00000612648 864 ntBASIC13.11□□□□□ -0.31
HSPG2P98160 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
HSPG2P98160 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HSPG2P98160 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC13.11□□□□□ -0.31
HSPG2P98160 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC13.11□□□□□ -0.31
HSPG2P98160 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HSPG2P98160 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HSPG2P98160 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
HSPG2P98160 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
HSPG2P98160 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HSPG2P98160 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
HSPG2P98160 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
HSPG2P98160 RARG-204ENST00000543726 1779 ntTSL 2 BASIC13.11□□□□□ -0.31
HSPG2P98160 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HSPG2P98160 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC13.11□□□□□ -0.31
HSPG2P98160 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HSPG2P98160 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
HSPG2P98160 AP003733.4-201ENST00000623785 1697 ntBASIC13.11□□□□□ -0.31
HSPG2P98160 AC138932.3-201ENST00000567634 1902 ntBASIC13.11□□□□□ -0.31
HSPG2P98160 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC13.11□□□□□ -0.31
HSPG2P98160 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
HSPG2P98160 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC13.1□□□□□ -0.31
HSPG2P98160 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HSPG2P98160 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HSPG2P98160 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
HSPG2P98160 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC13.1□□□□□ -0.31
HSPG2P98160 AC026396.1-201ENST00000419388 421 ntBASIC13.1□□□□□ -0.31
HSPG2P98160 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HSPG2P98160 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HSPG2P98160 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC13.1□□□□□ -0.31
HSPG2P98160 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC13.1□□□□□ -0.31
HSPG2P98160 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC13.1□□□□□ -0.31
HSPG2P98160 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
HSPG2P98160 AC006557.6-201ENST00000623071 864 ntBASIC13.1□□□□□ -0.31
HSPG2P98160 GLDC-219ENST00000640208 420 ntTSL 2 BASIC13.1□□□□□ -0.31
HSPG2P98160 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HSPG2P98160 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HSPG2P98160 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HSPG2P98160 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC13.1□□□□□ -0.31
HSPG2P98160 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HSPG2P98160 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC13.1□□□□□ -0.31
HSPG2P98160 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HSPG2P98160 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HSPG2P98160 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC13.1□□□□□ -0.31
HSPG2P98160 AC006011.2-201ENST00000621313 1158 ntBASIC13.1□□□□□ -0.31
HSPG2P98160 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HSPG2P98160 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HSPG2P98160 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
HSPG2P98160 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
HSPG2P98160 CRYGFP-201ENST00000418459 633 ntBASIC13.09□□□□□ -0.31
HSPG2P98160 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC13.09□□□□□ -0.31
HSPG2P98160 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC13.09□□□□□ -0.31
HSPG2P98160 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HSPG2P98160 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC13.09□□□□□ -0.31
HSPG2P98160 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
HSPG2P98160 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC13.09□□□□□ -0.31
HSPG2P98160 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HSPG2P98160 CYP2D8P-201ENST00000433633 1490 ntBASIC13.09□□□□□ -0.31
HSPG2P98160 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC13.09□□□□□ -0.31
HSPG2P98160 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
HSPG2P98160 MMP23A-201ENST00000234610 1017 ntBASIC13.09□□□□□ -0.31
HSPG2P98160 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HSPG2P98160 SAPCD2P4-201ENST00000424595 1171 ntBASIC13.09□□□□□ -0.31
HSPG2P98160 DECR2-212ENST00000627716 352 ntTSL 2 BASIC13.09□□□□□ -0.31
HSPG2P98160 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC13.09□□□□□ -0.31
HSPG2P98160 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC13.09□□□□□ -0.31
HSPG2P98160 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HSPG2P98160 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HSPG2P98160 KRASP1-201ENST00000407852 552 ntBASIC13.09□□□□□ -0.31
HSPG2P98160 DUSP5P1-201ENST00000441325 1139 ntBASIC13.09□□□□□ -0.31
HSPG2P98160 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HSPG2P98160 CRK-204ENST00000574295 1391 ntTSL 5 BASIC13.09□□□□□ -0.31
HSPG2P98160 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC13.09□□□□□ -0.31
HSPG2P98160 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms