Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
PEX3P56589 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC23.02■■□□□ 1.28
PEX3P56589 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC23.02■■□□□ 1.28
PEX3P56589 CNN2P6-201ENST00000439038 900 ntBASIC23.02■■□□□ 1.28
PEX3P56589 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC23.02■■□□□ 1.28
PEX3P56589 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC23.02■■□□□ 1.28
PEX3P56589 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC23.02■■□□□ 1.28
PEX3P56589 RAP2CP1-201ENST00000605103 478 ntBASIC23.02■■□□□ 1.28
PEX3P56589 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC23.02■■□□□ 1.28
PEX3P56589 AL024507.2-201ENST00000606070 2574 ntBASIC23.02■■□□□ 1.28
PEX3P56589 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
PEX3P56589 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC23.02■■□□□ 1.28
PEX3P56589 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
PEX3P56589 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
PEX3P56589 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
PEX3P56589 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
PEX3P56589 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
PEX3P56589 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
PEX3P56589 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
PEX3P56589 AC090192.1-201ENST00000517740 490 ntBASIC23.01■■□□□ 1.27
PEX3P56589 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC23.01■■□□□ 1.27
PEX3P56589 MDK-213ENST00000617138 635 ntTSL 2 BASIC23.01■■□□□ 1.27
PEX3P56589 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC23.01■■□□□ 1.27
PEX3P56589 AC026310.3-201ENST00000625186 2373 ntBASIC23.01■■□□□ 1.27
PEX3P56589 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
PEX3P56589 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC23.01■■□□□ 1.27
PEX3P56589 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
PEX3P56589 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
PEX3P56589 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
PEX3P56589 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC23■■□□□ 1.27
PEX3P56589 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
PEX3P56589 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC23■■□□□ 1.27
PEX3P56589 AC245052.3-201ENST00000450182 901 ntBASIC23■■□□□ 1.27
PEX3P56589 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC23■■□□□ 1.27
PEX3P56589 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC23■■□□□ 1.27
PEX3P56589 AC243732.1-201ENST00000612648 864 ntBASIC23■■□□□ 1.27
PEX3P56589 MAZ-216ENST00000616501 991 ntTSL 5 BASIC23■■□□□ 1.27
PEX3P56589 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
PEX3P56589 AC231657.2-201ENST00000624556 255 ntBASIC23■■□□□ 1.27
PEX3P56589 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC23■■□□□ 1.27
PEX3P56589 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
PEX3P56589 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC23■■□□□ 1.27
PEX3P56589 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC23■■□□□ 1.27
PEX3P56589 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC22.99■■□□□ 1.27
PEX3P56589 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
PEX3P56589 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC22.99■■□□□ 1.27
PEX3P56589 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
PEX3P56589 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
PEX3P56589 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
PEX3P56589 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC22.99■■□□□ 1.27
PEX3P56589 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC22.99■■□□□ 1.27
PEX3P56589 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
PEX3P56589 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
PEX3P56589 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
PEX3P56589 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC22.99■■□□□ 1.27
PEX3P56589 AC026185.1-201ENST00000445748 174 ntBASIC22.99■■□□□ 1.27
PEX3P56589 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
PEX3P56589 AC013268.1-206ENST00000638368 961 ntBASIC22.99■■□□□ 1.27
PEX3P56589 AC112229.1-201ENST00000639295 961 ntBASIC22.99■■□□□ 1.27
PEX3P56589 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
PEX3P56589 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC22.99■■□□□ 1.27
PEX3P56589 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC22.99■■□□□ 1.27
PEX3P56589 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC22.98■■□□□ 1.27
PEX3P56589 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC22.98■■□□□ 1.27
PEX3P56589 PARN-205ENST00000539279 1557 ntTSL 2 BASIC22.98■■□□□ 1.27
PEX3P56589 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC22.98■■□□□ 1.27
PEX3P56589 AC007322.1-201ENST00000426983 750 ntBASIC22.98■■□□□ 1.27
PEX3P56589 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC22.98■■□□□ 1.27
PEX3P56589 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC22.98■■□□□ 1.27
PEX3P56589 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC22.98■■□□□ 1.27
PEX3P56589 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
PEX3P56589 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC22.98■■□□□ 1.27
PEX3P56589 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC22.98■■□□□ 1.27
PEX3P56589 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
PEX3P56589 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC22.98■■□□□ 1.27
PEX3P56589 FEM1AP4-201ENST00000443167 1987 ntBASIC22.98■■□□□ 1.27
PEX3P56589 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
PEX3P56589 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
PEX3P56589 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC22.97■■□□□ 1.27
PEX3P56589 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
PEX3P56589 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC22.97■■□□□ 1.27
PEX3P56589 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
PEX3P56589 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC22.97■■□□□ 1.27
PEX3P56589 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC22.97■■□□□ 1.27
PEX3P56589 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
PEX3P56589 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC22.97■■□□□ 1.27
PEX3P56589 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC22.97■■□□□ 1.27
PEX3P56589 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
PEX3P56589 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
PEX3P56589 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC22.97■■□□□ 1.27
PEX3P56589 AF106564.1-201ENST00000607058 2553 ntBASIC22.96■■□□□ 1.27
PEX3P56589 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC22.96■■□□□ 1.27
PEX3P56589 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
PEX3P56589 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC22.96■■□□□ 1.27
PEX3P56589 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC22.96■■□□□ 1.27
PEX3P56589 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC22.96■■□□□ 1.27
PEX3P56589 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC22.96■■□□□ 1.27
PEX3P56589 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
PEX3P56589 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC22.96■■□□□ 1.27
PEX3P56589 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC22.96■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 83.8 ms