Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TNFRSF4P43489 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
TNFRSF4P43489 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC21.08■□□□□ 0.97
TNFRSF4P43489 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TNFRSF4P43489 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TNFRSF4P43489 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC21.08■□□□□ 0.97
TNFRSF4P43489 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC21.08■□□□□ 0.97
TNFRSF4P43489 MMD2-204ENST00000612910 778 ntTSL 5 BASIC21.08■□□□□ 0.97
TNFRSF4P43489 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TNFRSF4P43489 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
TNFRSF4P43489 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC21.07■□□□□ 0.96
TNFRSF4P43489 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
TNFRSF4P43489 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TNFRSF4P43489 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
TNFRSF4P43489 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
TNFRSF4P43489 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TNFRSF4P43489 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TNFRSF4P43489 AC142381.4-202ENST00000563973 229 ntBASIC21.07■□□□□ 0.96
TNFRSF4P43489 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC21.07■□□□□ 0.96
TNFRSF4P43489 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC21.07■□□□□ 0.96
TNFRSF4P43489 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TNFRSF4P43489 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TNFRSF4P43489 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC21.07■□□□□ 0.96
TNFRSF4P43489 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TNFRSF4P43489 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TNFRSF4P43489 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TNFRSF4P43489 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TNFRSF4P43489 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TNFRSF4P43489 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC21.06■□□□□ 0.96
TNFRSF4P43489 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TNFRSF4P43489 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TNFRSF4P43489 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC21.06■□□□□ 0.96
TNFRSF4P43489 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC21.06■□□□□ 0.96
TNFRSF4P43489 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC21.06■□□□□ 0.96
TNFRSF4P43489 C9orf163-202ENST00000624034 2573 ntBASIC21.06■□□□□ 0.96
TNFRSF4P43489 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
TNFRSF4P43489 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TNFRSF4P43489 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC21.06■□□□□ 0.96
TNFRSF4P43489 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
TNFRSF4P43489 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.06■□□□□ 0.96
TNFRSF4P43489 NXN-202ENST00000537628 1340 ntTSL 3 BASIC21.05■□□□□ 0.96
TNFRSF4P43489 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.05■□□□□ 0.96
TNFRSF4P43489 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC21.05■□□□□ 0.96
TNFRSF4P43489 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC21.05■□□□□ 0.96
TNFRSF4P43489 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TNFRSF4P43489 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TNFRSF4P43489 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TNFRSF4P43489 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC21.05■□□□□ 0.96
TNFRSF4P43489 HES2-205ENST00000487437 968 ntTSL 3 BASIC21.05■□□□□ 0.96
TNFRSF4P43489 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
TNFRSF4P43489 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
TNFRSF4P43489 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC21.05■□□□□ 0.96
TNFRSF4P43489 AC073648.6-201ENST00000641589 218 ntBASIC21.05■□□□□ 0.96
TNFRSF4P43489 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TNFRSF4P43489 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TNFRSF4P43489 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
TNFRSF4P43489 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TNFRSF4P43489 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
TNFRSF4P43489 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TNFRSF4P43489 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC21.04■□□□□ 0.96
TNFRSF4P43489 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
TNFRSF4P43489 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TNFRSF4P43489 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TNFRSF4P43489 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TNFRSF4P43489 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC21.04■□□□□ 0.96
TNFRSF4P43489 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC21.04■□□□□ 0.96
TNFRSF4P43489 AL158047.1-201ENST00000445918 881 ntBASIC21.04■□□□□ 0.96
TNFRSF4P43489 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC21.04■□□□□ 0.96
TNFRSF4P43489 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TNFRSF4P43489 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TNFRSF4P43489 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
TNFRSF4P43489 ME2-208ENST00000638937 2471 ntTSL 5 BASIC21.04■□□□□ 0.96
TNFRSF4P43489 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC21.04■□□□□ 0.96
TNFRSF4P43489 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.04■□□□□ 0.96
TNFRSF4P43489 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TNFRSF4P43489 CASK-201ENST00000378154 2494 ntTSL 5 BASIC21.03■□□□□ 0.96
TNFRSF4P43489 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TNFRSF4P43489 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TNFRSF4P43489 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TNFRSF4P43489 BAALC-201ENST00000297574 801 ntTSL 3 BASIC21.03■□□□□ 0.96
TNFRSF4P43489 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TNFRSF4P43489 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TNFRSF4P43489 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC21.03■□□□□ 0.96
TNFRSF4P43489 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC21.03■□□□□ 0.96
TNFRSF4P43489 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TNFRSF4P43489 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TNFRSF4P43489 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TNFRSF4P43489 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TNFRSF4P43489 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC21.02■□□□□ 0.96
TNFRSF4P43489 AC116050.2-201ENST00000612102 1779 ntBASIC21.02■□□□□ 0.96
TNFRSF4P43489 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TNFRSF4P43489 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
TNFRSF4P43489 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
TNFRSF4P43489 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TNFRSF4P43489 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
TNFRSF4P43489 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.96
TNFRSF4P43489 CYP21A1P-202ENST00000354927 1481 ntBASIC21.02■□□□□ 0.96
TNFRSF4P43489 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TNFRSF4P43489 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
TNFRSF4P43489 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 69.1 ms