Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 MYCNOS-205ENST00000641950 531 ntBASIC21.71■■□□□ 1.07
PTPN9P43378 EXOC3-AS1-202ENST00000623673 1663 ntBASIC21.71■■□□□ 1.07
PTPN9P43378 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
PTPN9P43378 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PTPN9P43378 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PTPN9P43378 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
PTPN9P43378 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
PTPN9P43378 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PTPN9P43378 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PTPN9P43378 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
PTPN9P43378 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC21.7■■□□□ 1.07
PTPN9P43378 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC21.7■■□□□ 1.06
PTPN9P43378 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC21.7■■□□□ 1.06
PTPN9P43378 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PTPN9P43378 GXYLT1P2-201ENST00000433312 1230 ntBASIC21.7■■□□□ 1.06
PTPN9P43378 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC21.7■■□□□ 1.06
PTPN9P43378 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC21.7■■□□□ 1.06
PTPN9P43378 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC21.7■■□□□ 1.06
PTPN9P43378 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC21.7■■□□□ 1.06
PTPN9P43378 FGF8-207ENST00000618991 856 ntTSL 3 BASIC21.7■■□□□ 1.06
PTPN9P43378 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PTPN9P43378 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
PTPN9P43378 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.7■■□□□ 1.06
PTPN9P43378 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC21.7■■□□□ 1.06
PTPN9P43378 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC21.7■■□□□ 1.06
PTPN9P43378 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PTPN9P43378 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
PTPN9P43378 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.69■■□□□ 1.06
PTPN9P43378 PARP1-202ENST00000366792 553 ntTSL 3 BASIC21.69■■□□□ 1.06
PTPN9P43378 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
PTPN9P43378 HSCB-202ENST00000398941 955 ntTSL 2 BASIC21.69■■□□□ 1.06
PTPN9P43378 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC21.69■■□□□ 1.06
PTPN9P43378 KRT18P11-201ENST00000435214 1283 ntBASIC21.69■■□□□ 1.06
PTPN9P43378 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PTPN9P43378 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC21.69■■□□□ 1.06
PTPN9P43378 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC21.69■■□□□ 1.06
PTPN9P43378 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
PTPN9P43378 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PTPN9P43378 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PTPN9P43378 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
PTPN9P43378 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
PTPN9P43378 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC21.69■■□□□ 1.06
PTPN9P43378 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC21.68■■□□□ 1.06
PTPN9P43378 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PTPN9P43378 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC21.68■■□□□ 1.06
PTPN9P43378 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
PTPN9P43378 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC21.68■■□□□ 1.06
PTPN9P43378 AC137761.2-201ENST00000561729 223 ntBASIC21.68■■□□□ 1.06
PTPN9P43378 AC145350.3-201ENST00000569033 163 ntBASIC21.68■■□□□ 1.06
PTPN9P43378 RBM17P2-201ENST00000616397 1405 ntBASIC21.68■■□□□ 1.06
PTPN9P43378 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PTPN9P43378 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC21.68■■□□□ 1.06
PTPN9P43378 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC21.68■■□□□ 1.06
PTPN9P43378 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PTPN9P43378 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PTPN9P43378 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PTPN9P43378 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC21.67■■□□□ 1.06
PTPN9P43378 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PTPN9P43378 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PTPN9P43378 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC21.67■■□□□ 1.06
PTPN9P43378 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PTPN9P43378 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC21.67■■□□□ 1.06
PTPN9P43378 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PTPN9P43378 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
PTPN9P43378 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PTPN9P43378 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PTPN9P43378 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
PTPN9P43378 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC21.66■■□□□ 1.06
PTPN9P43378 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
PTPN9P43378 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC21.66■■□□□ 1.06
PTPN9P43378 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PTPN9P43378 ME3-201ENST00000323418 1068 ntTSL 5 BASIC21.66■■□□□ 1.06
PTPN9P43378 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
PTPN9P43378 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
PTPN9P43378 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC21.66■■□□□ 1.06
PTPN9P43378 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC21.66■■□□□ 1.06
PTPN9P43378 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PTPN9P43378 WWOX-218ENST00000627394 894 ntTSL 5 BASIC21.66■■□□□ 1.06
PTPN9P43378 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PTPN9P43378 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PTPN9P43378 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
PTPN9P43378 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PTPN9P43378 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PTPN9P43378 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PTPN9P43378 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PTPN9P43378 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC21.65■■□□□ 1.06
PTPN9P43378 AC006015.1-201ENST00000429970 570 ntBASIC21.65■■□□□ 1.06
PTPN9P43378 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
PTPN9P43378 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PTPN9P43378 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PTPN9P43378 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
PTPN9P43378 AC121338.2-201ENST00000622535 1744 ntBASIC21.65■■□□□ 1.06
PTPN9P43378 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PTPN9P43378 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
PTPN9P43378 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.06
PTPN9P43378 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
PTPN9P43378 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC21.64■■□□□ 1.06
PTPN9P43378 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
PTPN9P43378 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
PTPN9P43378 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC21.64■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms