Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
HNF4AP41235 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.18■□□□□ 0.82
HNF4AP41235 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20.18■□□□□ 0.82
HNF4AP41235 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
HNF4AP41235 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.18■□□□□ 0.82
HNF4AP41235 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.18■□□□□ 0.82
HNF4AP41235 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HNF4AP41235 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HNF4AP41235 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HNF4AP41235 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
HNF4AP41235 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
HNF4AP41235 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HNF4AP41235 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HNF4AP41235 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HNF4AP41235 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
HNF4AP41235 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC20.17■□□□□ 0.82
HNF4AP41235 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.17■□□□□ 0.82
HNF4AP41235 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC20.17■□□□□ 0.82
HNF4AP41235 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
HNF4AP41235 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HNF4AP41235 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HNF4AP41235 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HNF4AP41235 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
HNF4AP41235 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HNF4AP41235 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HNF4AP41235 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HNF4AP41235 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC20.16■□□□□ 0.82
HNF4AP41235 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HNF4AP41235 AC008175.2-201ENST00000612840 297 ntBASIC20.16■□□□□ 0.82
HNF4AP41235 AC004854.2-201ENST00000608450 1441 ntBASIC20.16■□□□□ 0.82
HNF4AP41235 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
HNF4AP41235 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
HNF4AP41235 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
HNF4AP41235 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
HNF4AP41235 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
HNF4AP41235 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC20.15■□□□□ 0.82
HNF4AP41235 POU5F1P4-201ENST00000413175 1085 ntBASIC20.15■□□□□ 0.82
HNF4AP41235 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HNF4AP41235 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC20.15■□□□□ 0.82
HNF4AP41235 TESC-206ENST00000541210 936 ntTSL 3 BASIC20.15■□□□□ 0.82
HNF4AP41235 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
HNF4AP41235 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
HNF4AP41235 AP004607.4-201ENST00000530158 1459 ntBASIC20.15■□□□□ 0.82
HNF4AP41235 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.15■□□□□ 0.82
HNF4AP41235 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.15■□□□□ 0.82
HNF4AP41235 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HNF4AP41235 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.15■□□□□ 0.82
HNF4AP41235 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.15■□□□□ 0.82
HNF4AP41235 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.15■□□□□ 0.82
HNF4AP41235 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
HNF4AP41235 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HNF4AP41235 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
HNF4AP41235 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.14■□□□□ 0.81
HNF4AP41235 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
HNF4AP41235 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
HNF4AP41235 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
HNF4AP41235 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.14■□□□□ 0.81
HNF4AP41235 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HNF4AP41235 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
HNF4AP41235 SERP1-208ENST00000491660 830 ntTSL 2 BASIC20.14■□□□□ 0.81
HNF4AP41235 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC20.14■□□□□ 0.81
HNF4AP41235 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.14■□□□□ 0.81
HNF4AP41235 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.14■□□□□ 0.81
HNF4AP41235 AC138907.5-202ENST00000569484 235 ntBASIC20.14■□□□□ 0.81
HNF4AP41235 NTF6G-201ENST00000591094 616 ntBASIC20.14■□□□□ 0.81
HNF4AP41235 AC104187.1-201ENST00000607510 612 ntBASIC20.14■□□□□ 0.81
HNF4AP41235 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
HNF4AP41235 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.14■□□□□ 0.81
HNF4AP41235 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
HNF4AP41235 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
HNF4AP41235 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HNF4AP41235 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HNF4AP41235 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC20.13■□□□□ 0.81
HNF4AP41235 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC20.13■□□□□ 0.81
HNF4AP41235 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC20.13■□□□□ 0.81
HNF4AP41235 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC20.13■□□□□ 0.81
HNF4AP41235 MIR5787-201ENST00000611784 55 ntBASIC20.13■□□□□ 0.81
HNF4AP41235 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HNF4AP41235 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC20.13■□□□□ 0.81
HNF4AP41235 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HNF4AP41235 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HNF4AP41235 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.13■□□□□ 0.81
HNF4AP41235 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
HNF4AP41235 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
HNF4AP41235 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HNF4AP41235 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HNF4AP41235 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.13■□□□□ 0.81
HNF4AP41235 AC061975.6-201ENST00000579045 1553 ntBASIC20.12■□□□□ 0.81
HNF4AP41235 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HNF4AP41235 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HNF4AP41235 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HNF4AP41235 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
HNF4AP41235 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.12■□□□□ 0.81
HNF4AP41235 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC20.12■□□□□ 0.81
HNF4AP41235 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC20.12■□□□□ 0.81
HNF4AP41235 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC20.12■□□□□ 0.81
HNF4AP41235 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HNF4AP41235 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC20.12■□□□□ 0.81
HNF4AP41235 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC20.12■□□□□ 0.81
HNF4AP41235 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms