Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC19.56■□□□□ 0.72
SOX3P41225 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SOX3P41225 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SOX3P41225 VPS53-216ENST00000574029 585 ntTSL 4 BASIC19.56■□□□□ 0.72
SOX3P41225 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.56■□□□□ 0.72
SOX3P41225 RARRES2P11-201ENST00000635158 484 ntBASIC19.56■□□□□ 0.72
SOX3P41225 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
SOX3P41225 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SOX3P41225 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.56■□□□□ 0.72
SOX3P41225 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SOX3P41225 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.56■□□□□ 0.72
SOX3P41225 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
SOX3P41225 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.56■□□□□ 0.72
SOX3P41225 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.55■□□□□ 0.72
SOX3P41225 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SOX3P41225 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SOX3P41225 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.55■□□□□ 0.72
SOX3P41225 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SOX3P41225 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SOX3P41225 SPI1-203ENST00000533030 661 ntTSL 2 BASIC19.55■□□□□ 0.72
SOX3P41225 EEF1DP3-203ENST00000566025 782 ntBASIC19.55■□□□□ 0.72
SOX3P41225 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.55■□□□□ 0.72
SOX3P41225 AC138907.5-202ENST00000569484 235 ntBASIC19.55■□□□□ 0.72
SOX3P41225 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SOX3P41225 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SOX3P41225 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.55■□□□□ 0.72
SOX3P41225 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC19.55■□□□□ 0.72
SOX3P41225 AC026471.6-201ENST00000622954 1905 ntBASIC19.55■□□□□ 0.72
SOX3P41225 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SOX3P41225 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SOX3P41225 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
SOX3P41225 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.55■□□□□ 0.72
SOX3P41225 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SOX3P41225 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SOX3P41225 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC19.54■□□□□ 0.72
SOX3P41225 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC19.54■□□□□ 0.72
SOX3P41225 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC19.54■□□□□ 0.72
SOX3P41225 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SOX3P41225 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SOX3P41225 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SOX3P41225 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.54■□□□□ 0.72
SOX3P41225 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.54■□□□□ 0.72
SOX3P41225 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
SOX3P41225 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SOX3P41225 AC010141.2-201ENST00000452426 721 ntBASIC19.54■□□□□ 0.72
SOX3P41225 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.54■□□□□ 0.72
SOX3P41225 AC053503.5-201ENST00000601508 636 ntBASIC19.54■□□□□ 0.72
SOX3P41225 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SOX3P41225 AC003102.1-202ENST00000563394 1796 ntBASIC19.54■□□□□ 0.72
SOX3P41225 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SOX3P41225 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SOX3P41225 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.54■□□□□ 0.72
SOX3P41225 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19.53■□□□□ 0.72
SOX3P41225 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
SOX3P41225 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SOX3P41225 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SOX3P41225 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SOX3P41225 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SOX3P41225 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SOX3P41225 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.53■□□□□ 0.72
SOX3P41225 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.53■□□□□ 0.72
SOX3P41225 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SOX3P41225 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SOX3P41225 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SOX3P41225 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SOX3P41225 KRT18P11-201ENST00000435214 1283 ntBASIC19.53■□□□□ 0.72
SOX3P41225 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SOX3P41225 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SOX3P41225 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.53■□□□□ 0.72
SOX3P41225 AC090192.1-201ENST00000517740 490 ntBASIC19.53■□□□□ 0.72
SOX3P41225 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.53■□□□□ 0.72
SOX3P41225 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SOX3P41225 BID-214ENST00000617586 542 ntTSL 5 BASIC19.53■□□□□ 0.72
SOX3P41225 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SOX3P41225 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SOX3P41225 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SOX3P41225 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SOX3P41225 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SOX3P41225 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SOX3P41225 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SOX3P41225 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SOX3P41225 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SOX3P41225 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
SOX3P41225 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
SOX3P41225 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SOX3P41225 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
SOX3P41225 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
SOX3P41225 UBE2DNL-204ENST00000602536 740 ntBASIC19.52■□□□□ 0.72
SOX3P41225 AC080038.1-201ENST00000611274 1154 ntBASIC19.52■□□□□ 0.72
SOX3P41225 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.52■□□□□ 0.72
SOX3P41225 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SOX3P41225 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.52■□□□□ 0.71
SOX3P41225 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.71
SOX3P41225 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.71
SOX3P41225 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
SOX3P41225 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SOX3P41225 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
SOX3P41225 AL157384.1-201ENST00000445995 2473 ntBASIC19.51■□□□□ 0.71
SOX3P41225 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SOX3P41225 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms